| Id Trinity | FTRINITY_DN56011_c0_g1_i8 |
|---|---|
| Name Transcript | Ll_transcript_71642 |
| Sequence | ATAAAACTAACTTGAGCAAACAACAGAAGATAGGGACAAAGAGATAAGGATTTAAAGCCTTGCCATTCATTTCCCTCCCTCTATCTTCATGACCCATTTC CTTTTTTCCCATAAACACTTCATTTTTACAATTTTACCGAACTTCTAAGACCAAACTGTTCCTCTCATTTTTTTTGGTCTTTTGAACCTTCTGAGGTACC TATTATGCTTCAAACAATGATGAACCTTTTTGTTTTTCTATTCTACTTATTCCATTATTCTGTTAAAATTGCTTATTTGAACTTTGAACTCACTTTTTAC TGTTGCAAAACCTCTTCAAAAAATTCTTATTCCACACTTGTAGCTCAATTTACTAAGCTTATGTTATTAATTTTGGAAAAAGGATCTTGGGTTTTCATGT TCTCCTCAATTATGTGTATCAGTGTGGTGTTTCCATGAAATGACCTTTAAAAACTTCTTTTTGTTCATTCTGTAAGGTTAATTTGCATTATAGACTATTT TATAATCTGTGGGGTGGTTTAAAAATTTATTTAGTGGTTCATAGTATCATGTTATGTTATATTTTGTTGGATTACTATCAACTGGCATTGGTTCAAGTGG TGCATGCTTGATTCCCCTTAAGCAAGGGTCTTGGGTTCGATTCTTGTGGATGGAAGAAACTCTTGTTGGGAGAGTTAGCCCCACATACCTGTGTGGATGT TCGACTCAGATAGGATTGCCTTTAGATACCCGTGGGAAACCAAAAAAAAATTTGTTGGATTGCCAAAACCAAATATTGAAATTCAACAATTCAAAGATAT TTAGATTTTGGGCAAGGTGAAAGAATTGAGGATTGTGCTCCAAACCCTTCTTCTTGAAATGTGCTACAATTTTCTAGTGAATTGTATAAGCATGTCGCAA GAAAAATAATGAGTATCTTGTATATAGGGAGTTTTAGCTAATTATATATAACTTGTAAACTATAGAAACTTCGTGAAACGTTTAGAACAAATAGCATCGC CATTAGAATGACGCGAGTAAATAGACATTACGAAGCTATTGTGTAAAGTGTGGTCGTGAAGGTTGTTTTACTATATATGCATATCTATGTCATTCAGCTA CTACAATTACTCCTACAATTATTGTTCTATCAAATATATGTTGTTTTCATGTATGATCAATTGACTCTCATGTCTTACTATCATTTCGATCCTTTCTAAA TTAAACAACACTTCTAAACACCATACATGAATGAAATGATGAGATGAAAAATAACCAATTGTTTTGTAGGAGGGAATAAACCATTTTAAAGGATGATTAT ATCACCATAAACAGTTTTAATCAAGTTAATTACCATGATCTTACTGAATAGAAGTCCTAACTTGCGGTTTGTTAAAATCGTGAAATGCTCAATTCTTTTA CTTTCTTTGTCTTAGTAAAATTTATACAGGGTAGTTTTTCATGGAGTCAGGAGAATTGCAATGTAGTGAGGATGAGTATTTAGTTATGATTAGCAAAATA TGTGGCTATGCTAGATGTGCTTGTGCAGATATCGATGCTGAAATATGTAGCATGTTACTTAATTTGATTCATTTATTTTGTAAAATTTTGCTTTTTAAAC CAATTATTTGATTTATAACCAAAATTGATTTTTAACTGTATGTTATGTGAAAATGACAACAGATGAGCCGTTCTGATATATAACCGAGTTTCACAATTCA AGCTAACATGAACCCTGTAATTCCATGTTCTGTCAGCAATGTTTCACTTATTCCTGGTGTCGCCTTTCCAACAAGGACGAATAATTCTTTAACAACACTC AGTTTGTCAAAGAGCTCTGTAAAGTCTGTATCATCAACTCGGAGATGTCTCTTACCTTCGTTTGTTGCCAATGGAGTGTTTCCAAAGAACAAAAGGAGAT TCTCTTTTCATAAAAAATCTCGGACCAGCATATCAGCCACCACAGAAACTGAAGTAGCAGTAGAGGAACCAGGTTCCACTGTTGCAGGCGAAGTTTCTGG CGAAACTCCTTCAGATGATGTTGGAACAAGTGAGGATTCATCTCCGAAGTCTGATGCCAAATCTGATCCAGCTAAAGCCAACCGTTCAAGACCTGCAAGT GCAAGGAGAAGTGACTTGCCTCCTGTAAAGAATGAGGATTTGATTCCTGGGGCAACTTTTACCGGCAAAGTTAAATCTATCCAACCATTTGGTGCCTTCA TTGATTTTGGAGCTTTCACAGATGGGCTTGTTCACGTTTCAATGTTGAGTGATGACTATGTTAAGGATGTTTCAAAGGTTGTTTCTGTCGGACAAGAAGT GAAGGTGAAGCTGATTGAAGTGAACACTGAAACTCGGCGTATTTCTCTCTCTATGCGTGAAAATGCAGACACTGGTAAGCAACGTAAAGAGACATCTACC AATGCAGAGAAAGGTGGACCTGGGAAGAGGAACACTTCAAAACCAGGTCCAAGGAAAGATGGTGGGAGGAAAAGCTCAAAATTTGTCATAGGGCAGGACC TGCAGGGTACAGTGAAGAATATGACTAGGAGTGGTGCTTTTATTTCTCTTCCTGATGGGGAGGAAGGATTTCTACCAATATCCGAGGAACCTGATGATGG ATTTGGGAATGTTATGGGAAACACATCGCTGGAGGTTGGTCAAGAAGTCAGTGTGCGTGTTTTGCGTATCTCGAGAGGACAAGCAACATTGACTATGAAG AAAGCGGAAGATGCTGTGAAAGTGGACACAGTACTTGGTGAAGGCGTTGTCCATGTTGCAACAAACCCTTTTTTGTTGGCCTTTCGTAAGAATAAGGATA TTGCTAAGTTTTTGGATGAGAGGGAGAAAATTCAGAATACAGTTGAAAATTCTTCTACCACAAAAACTTCAGAAGATGTTAAGGAAACTGTCAAGGAAGC GGAAGCTGTTGTGAAGGATGAACCAGAAAGCATCGAGACCTTGATAGATGATGCTCCTTCTGCAGATGATATTTCTGAGGAAGATGCGGGAGCCAGTGCA TTTGATGGTTCCTCAATAGCTATTGTGGATGATGAAAGAGATTCAGTTCCCAATCTCTCTAGCCAAGCACCATCTATAGACGATGCTGCTGAGAAGGACA CAAAGGAGGTGGCTTCTGGAAGCTTGGCTCCTGAAGGGGATCTATCTACTCTAAATCCAATTATTGAGGAAGCCACTCAGGCAGATGTCACAACAAGCAC CATAGAAACTGAGTCACCTCTTGAAACAGCTAATGGAAATATAATCGAAAGTGGAGTTGATCCTATCATTGTGGAAGATGAACAATCACAAACATCTAAT ACAAAGGAAGGTTTTGCTGCAGCAGCATTAACAGACAGTGATGTTGTTGAACCTAGCCCTGATAATGTTGACACTATTGCACCACCTCCCCAAGAAACTG CAGGTTGTGTGTACTCTATCTAACATTCTGCTAAACAAAGCCATCTGTCCTTTTGTCTGTCTCATTTATATTTACATATTGAAATACTGATTAGAAGTCT ATTCTCAAAATGACAACTAAAAAGAAACATATTTGTTCAATAAGATGCCATTCAAAGAGCCTCCCATTTAACTTATCAAATAATATGCCATTTACATCAC AAGTAGATGACAATGTTGAAATTTTTCCCAAGAAGAATGACAGTGATACCTAAGTTTAAGTGGACAAAATGGTGAGTTGTCTTCTGAGGGAAGCTTGAAT AAAGGTTATGCTTAAAAAACTCAATTCCTGTTTGCCTGGTTCAATTTTGGGCAGTGAATGAAAATTGGTAGCAAGTTTTGTAAAATTGGGCTGTATTTGA TCTTTATATTTGAATCATATATTACATGATACTGCATCCCTTTCATTTCCAATGTAATCACTATCAATTAGTTTTATGTAACTGAAGCAATTGATCTCAT TATAATTGGCTTATTTATTTAACACATGGAGGATTTTTATCTATACTTTTGTTATAAAGAGAATTTTCTTGAACTTTTAATCCTCTTTCAACAGATGAGG CAGAAGAAAATGATCAAGTTCCCCCTCCTGAAACTCCTGCCACTGAAGTCATAGAAGGATCCATTGAGGAGCCCAAAGAAGAGCAAAATCAATCACCAAA CACAGAGAATGAAAATTTGCTTACCTCACAAGTTGAACATAAAGAGGTTACAATTGCATCCGAGGAAAATAATGCCTCATCTAATTCTAATGGGCAAACT AGCACTACTCCTTCAGATGAAGGCTCACTTCAAGCAACTATATCCCCGGCACTTGTGAAGCATCTTCGGGAAGAAACGGGAGCTGGAATGATGGACTGCA AAAAAGCTCTGGTGGATACTGGTGGAGACATTATTAAAGCACAAGAGTTCCTTAGGAAAAAAGGGTTATCAAGTGCAGAAAAGAAAGCTAGCAGAGTAAC AGCTGAAGGAAGAATAGGGTCTTACATCCATGACAGCAGGATTGGTGTTTTGATAGAAGTTAACTGTGAGACAGATTTTGTATCCCGTGGTGACATTTTT AAAGAGCTGGTTGATGATATAGCCATGCAAGTGGCTGCATGCCCTCAAGTAGAGTATCTTTCTACTGAAGATGTTCCTGATGAATTTGTGAACAAAGAAA AAGAGATAGAAATGCAGAAAGAAGATCTTTCATCTAAACCAGAGCAATTTAGATCGAAGATTGTTGAAGGGAGGATAAGAAAAAGGCTTGAGGAGCTGGC ATTGCTTGAGCAACCTTACATTAAGAATGATAAAGTGGCGGTAAAGGACTTTGTTAAGCAGAC BLAST |
| Tissue | flowers |
| Gene name | LI_gene_56569; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_71642
| Blastp | 30S ribosomal protein S1 homolog from Bacillus with 34.36% of identity |
|---|---|
| Blastx | Elongation factor Ts from Prochlorococcus with 64.41% of identity |
| Eggnog | thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence (By similarity)(COG0539) |
| Kegg | Link to kegg annotations (BSU22880) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019457841.1) |
| Pfam | S1 RNA binding domain (PF00575.22) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |