| Id Trinity | FTRINITY_DN56132_c0_g1_i40 |
|---|---|
| Name Transcript | Ll_transcript_225464 |
| Sequence | AAAGAAAATCAAAGTCAAATTAAGTATATTGAAATATATGCAAATCTAACATATCCAGAGAACATGGACTATTTTGGATTTAGATTTATTTATTCTCTTC AAAAAAGAAAGAAAGAAAAGGTTTGAATTAGGAAAATGCTGTGAACATCAAAACTTTCCTGTTAAGAAAATTACTACTATATATGGAGGGACCCACCCAC TCACCCATGTCCATGTTGATGTTGTATGGTTCTAGAAGGTACTGTTCCGTTGGTATTTAAAAGCAAGTTTAGCACAAGTAGAAAGAATGAGTGAATTAGA TGGGTACTATTAGTATTATCAAGTTTTGTCTTAACCTCTTCTTTTTCCTTCTACTTTCTCTATCCTATTCTACTTCCTCTTCCTTTGCTGAGGTTTTCTT TGAAGAGAATTTCCAAGATGGGTGGAAAAGCCGTTGGGTTTTGTCTGATTGGAAAAGGAGTGAAGGAAAAGCTGGTACCTTTAAGTACACTGCTGGAAAA TGGCCTGGAGATCCTGATGATAAAGGTATTCAGACATATAATGATGCTAAACATTATGCTATATCTGCTAAGATACCAGAGTTAAGCAATAAGAATAGAA CTCTGGTGGTTCAGTATTCTATTAAATTTGAGCAGGACATTGAATGTGGTGGTGGTTATATTAAACTCCTTTCTGGTTATGTTAATCAGAAGAAATTTGG TGGTGATACTCCTTATAGTTTGATGTTCGGACCAGACTTATGTCGCTCACAGACCAAGAAGCTACATGTTATACTATCATACCAGGGGCAGAATTACCCT ATTAGAAAGGATCTACAATGTGAAACAGACAAATTGACTCATTTCTATACATTTATTCTGAGGCCTGATGCCACTTATAGTGTCCCTGTCGATAATCGAG AAAGAGATTCTGGAAGCATGTACATAGATTGGGATATCCTTCCTCCAAAGAAAATCAAGGATGTCAATGCAAAAAAGGTCTGAGAGTTCATGTGTCAACC TGTATCTATGTCTTTTTCTTATTAGAATGATGTAATGGTGCAATCCTGCAATGTTCTTGTTTATTACTGACTGGATCCCTAAAGTCCTATGCTCTGAAAC AACTTAAACAGCATTCTATGAGATTATTTCATTGAAATACGAGAATTTTGGTTCGTTTTGCAAATCTTACATTATGTATCAGTCTACTTTTCTTGTAAAA CCTTTAACTTTCTCTATTGCAGCCAATAGACTGGGATGATAGAGAGTACATTGAAGACCCTAACGATGCCAAACCAGAGGTACTTTCTGTCCCCCGTTCC GCCCAAATCTTCCGATGTTAATGTGATTTCCCATCAAGATTGTAAGATCACAACCTTATTAGTATTTGCAGTTACATAAGAACCTTGATGATCACCTGTA GGAATTTCTATGAAAGGGTTTATTCTTCATTTCTATTTAATTACATACTCAGATGATAATTGCCTACTACAGCTAGCCGCACTATTAGAAAATGTTGGTT TTTTTGTTGATAGAGAGGCTTTTCAATTTTCAACAGAAATCTATAAAATTATAAGCATGGATAGAAGCACTTTCAATTAATTATTCTTTTATAACACATT GTTCTTCCTATGTTTATGTTTTCATTTGAGTGCTTATAACTGTCTTGATATGGCAGGGATATGATTCGATTCCGGCTGAAATTCCTGATCCAAAAGTCAA GGAGGTTTATGTGTTTACTACACATTTAGAATTTAAAAGATGTCAATAAATATGTTGTGGATAGTAAGCCACTACTTTTTATGCAAGACTTAATTTCGAT GGGGGCTTATGAATGTTCTTTTTTCTTCAAATTTTTGTTTTAGTAGCCTGTGGACTGGGATGAAGAAGAAGATGGACTTGAAAGCCCCCGAAAATTCCTA ATCCAGCATACCAAGGACCACGGAAGCGCAAGAAAATCAAGAATCTCAACTACAAAGGAAAGTGGAAGATTCCATGGATCGACAACCCAGAATTTGAGGA TGACCCTGATCTTTATATGCTGAAACCAATAAAGTATGTGGGCATTGAAGTGTGGCAGGTGAAAGCTGGTTCAATTTTCGACAATATCTTAACTTGTGAT AGCAAGGCAAGTTGTGGAAGAATTTTTGTCTGATAACAGAGAGGAAGCACAGAGAGCTAGAGAAGAGGGTGAAAATAGGAGGAGAGAGAGGGATCATAAA TATGGAGATAGGAAGAGGGATGAACTTTGAAATGTGCAGTGTCATTGTGGGTAGTTGTCCGAAGTGTGATTTGAAGCAATGTTGAATTGAATTGAATTGA ATGCCATGTTTGAAGATATTTGAGTGTAGGACCAAAGGTGCAATTGCACTGTCCATGCCAAGCTGTATTAAACTGTATCATCTCACTAGATATGGGCACT ACCCATTATGTTCATTTATTTTTCCATGGAATTAAAACTCACTACATTCAGATCCAAACATTTTCTGCCGGGGCGTTGGTTCAAGTGGTGCATGCTTGAT TCTTCTTAAGCAAGGTCTCAGTTCGATTCTTGTGGATGAAAAAAATATCCGCTGGGAGAGTTAGCCCCACATATGGATGTTCCCGGCTATGACAAGATCG CCTCCAATGCGAGGACATCTGTGGGAAACAAAAAAAAACTCATGAAACTTACCTGGGGTTACTTTTGTCTCTGCATTTGTTACGAGCTTCTTGAATTCTT GATTGTTCCATTTGTTCCAGCTATTTGAATAATTAAAGTATGAACAAGTCTTTTGTGAATCAAAGTGTTCTTGTAAGTTCTTCTGCAGAACAAATACGAC AGAATAAACAGGTGAACAGGAGCACATGTCTCGCTTATTGCCTTTGTTGAGGAGGCAGAGTCTTAATAATTTCCAGCGAAAGCGAATCAGTTGTAGCTTG ATCCCCAATCCTGTCCACTTCCACACATTTATATTGCCTTTATTGGGACCAAGGTCCGTTTCTCCTTCATGCGAATTGGATGTAAGGGGTTTTTGTACTG TAACTGCAACACTTGGTGCAAGCCCTCTAGACGATGCTGGTGATGATATCGTTTTACAGGATACTAAGAAAACCTATGAAAAGCCTATTGATTTTACTCA AATTCAGATTACTCGCCTCCCCACTGTCATCATTCTAGGCCGACCTAACGTAGGCAAGTCTGCTTTGTTTAATCGTTTAATTCGGAGGAGGGAGGCTCTG GTGTATAACACCCCACAAGATCATGTCACCCGCGACATTCGAGAAGGAATTGCCAAGTTGGGTGATTTACGATTCAAAGTGTTGGACTCTGCTGGTTTGG AAGCAGAAGCGACTTCTGGCTCTATCCTCCACCGAACAGCTTCTATGACAGCTCATGTGTTAGCAGCATCTAACTTTGCACTCTTCCTCACTGATGCAAG AGCTGGACTCCATCCTCTTGATTTGGAAGTCGGAAAATGGCTGCGCAAACATGCACCTCAAATCAAACCTATTGTCGTGATCAATAAATCTGAATCGCTG TTTGATGCTAGCGGCTCTCTCGCGTCAGCTGCTAATGAAGTATGCCGGTTAGGATTTGGGGATCCTATTGCTATATCTGCTGAGACGGGACTTGGAATGC ATGAATTATATCTGTCTCTTAGACCTGTGCTGGAGGACTATATGCTTCATGTCTTGAATAATGAAGTTGCTCAGGATAATAGCTACAGTGAGGACAGTAG CTCCCCCGAGGTTGACACCAGTAAGCTCCCGATGCAGTTAGCAATTGTAGGACGACCTAATGTTGGGAAATCAACCTTACTGAATTCATTGTTAAAAGAA GACCGTGTTCTTGTGGGTCCTGAAGCGGGTCTGACAAGAGATTCAATCAGAACCCAGTTTGAATATCAAGGAAGAACAATTTATCTGGTTGATACTGCTG GGTGGTTGCAGAGGACAAAACAGGATAAAGGTGCAGCATCCTTGAGCGTTATGCAATCAAGAAAGAGTCTACTCCGCGCTAATATAATTGCTTTGGTGCT AGATGCAGAAGAGATTGTAAATGCTAAACGAAGTATGAAACATGCTGAAGTCGTTATAGCTAGACGGGCAGTGGAAGAGGGACGTGGCCTTGTTGTGGTT GTAAACAAGATGGACCTTCTAAGGGGCAAGAATAAATCATTATCCTATGAGAAGGTTATGGAAATTGTTCCTCAAGAAATTCAGACAGTTATACCCCAGA TAACAGGAATCCCAGTGGTATTTACTTCAGCATTGGAGGGAAGGGGTCGAACTGCTGTCCTGAACCAGGTCGTTGATACATATGAAAAATGGTGTACAAG ATTACCTACTTCTCGTCTTAACCGATGGTTGAAGAAGGTTATGAGCAGGCATTCTTGGAAAGACCTGGCGGCGCAGCCGAAGATCAAGTACTTTACTCAG GTCAAGGCCCGGCCGCCGACATTTGTTGCATTTATGAGTGGAAAGACTCAGCTTTCTGATACTGACATTAGGTTCTTAACAAAATCCTTGAAGGATGATT TTGATTTGGGTGGAATTCCTATAAGGATCATGCAACGTTCTATCACTAAGAAAGAAGCAAGAAGCAGTAGTAGCAAGAGTAACCATTCGGTTTCAGCAAG TAGAGTGGCTGAAAGGGTCATGTCTGACAAGAGAAAAGTCATAGTTGAATGACAACATTATGAAGATGTAGCAGACCAGGATTTGGGAATTAGTTAGATG CTTACTGCAATTTATTTTTAAGTTTATTATCACGTCAAACGGTAAGGTTGTTTACCTTCTGATTTCGAGGTCACGAGTTCAAATCATAAAAACAATATCT TCGCTTGCAAAGATATGGTTATATATTTCTCAGACTTCATTAGATGAGAACCTCATGTATTAAACCGATCTTATGTTTGATTCGGAAATCTGAACGAATG AGTAGCACAATTACAAAATATTCAGTTGTATATATAATTTATGGATTGCCAATATTGAACATTATTGCTAATTCAGCAGGTGCACATTCCATGAAGCAGA CATTAGAAAACTCAAATACACAATGTAAATTGACAATTATCCACCAAAATAATTT BLAST |
| Tissue | flowers |
| Gene name | LI_gene_57581; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_225464
| Blastp | GTPase Der from Parvibaculum with 39.54% of identity |
|---|---|
| Blastx | Calreticulin-3 from Arabidopsis with 85.28% of identity |
| Eggnog | GTPase that plays an essential role in the late steps of ribosome biogenesis (By similarity)(COG1160) |
| Kegg | Link to kegg annotations (Plav_3492) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019420018.1) |
| Pfam | 50S ribosome-binding GTPase (PF01926.22) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |