| Id Trinity | FTRINITY_DN56212_c0_g1_i3 |
|---|---|
| Name Transcript | Ll_transcript_61369 |
| Sequence | ATACTCTCTATTTTCCATTCCATCAAACCCCACACTTCAATTTTCTTCTTGGAAGTATCAATGGCGTCTACACTTTCTGTAACTGCTCATTTTTCAGGCA TACATGGAGCAACTGAACGCAAAAATCTCCCATTTTCACCGACTTCTTTCTGTAAACTAAAGTCCAGTGCAAATATAGTTGACATGAAGATATTTTCGCG CAGTGGTTGTGAAAAAGCTGGACTCAATCATAGATATTTCCGAGTAAACGCCCTTTTTGGAGGGAAAAAAGAAAATAACGACAAAAGTGATGATGCACCT TCTAAGGCAGGAATGCTTGGAAATATGCAAAATCTTTTTGATACTGTGAAGAAGGCACAAATGGTTGTCCAAGTTGAAGCAGTGCGAGTACAGAAAGAAC TTGCCGTAGCAGAGTTTGATGGTTACTGTGAGGGTGAGTTAATAAAGGTAACATTATCTGGGAATCAGCAACCTATACGAACTGAAATTACTGAGGCTGC TATGGAACTCGGACCAGAGAAGCTTTCGCTTTTAGTCACAGAGGCTTACAAAGATGCACACCAGAAGAGTGTCCAGGCCATGAAGGAAAGGATGAATGAT CTTGCACAGAGCCTAGGAATGCCACCAGGGCTTGGTGGAGGATTAAAGTGATGACTGTGAGATGAACCTCAATTTTGCATACAGAACCATGTCACAAATG TTTATTTCTCCATCTACTATGATTTTGATGTTCAAGTGGTGGACCCTTTCCCCCTTTTAATAAGAAAAAAAGCCTTTTTCTTTATTCCTTATCCTTATTT GTTGAATGTTGAAAAATCAATTATCTCTTAACTTTGCACTCTCATAATTCTATTTTGCACTCCATGTCAAATGATTCAAATCAACTGTGAAGACCCTCCT CTATTTAAAATCTTGTGGTTAATGAAAAATGGTTTACACAATTGAGAGGACTAACAGCAACATAAATGAATCTGACCTGGTTGATTCATGGTTATAGTTT TTATTTTAAGTTTTGATAACCACATAATATGTAACTTTATCATAAATCTTTATCGAGGTCAATGGTCTTAAAATAAAAAACAATCATCTTTTACTTTAAA TTTGTATGTACCATTTTTTTTCATTTTGTACATGATAAAATGCTAGCACATTTAAATAAACTCATAACACCATAATAGACTATAAAAGTAGTATTTTACA TATAACTAATGTTACCATTTTTAAAACAAAAATAACCTCAATAAACAGTCCAAACAGTTTAATAGGCATAAATTCAGACTAAGTTGTAGTGTTCATTCAT CATATGTCCTAAATGGATAGATGTTAACCACTTGTTTTGAGTTCTGTAGAAACAGGTGTTTGAAAGTAACTGAAGAAAATGACTTCCTTATTATATCAGA ATTATGATTACTATGAGCCATTTATGATTCTGATAAGTCACAGAAGAAGGAGTCTCAAGTACAAAAAATGGTGGCAGGGAGTAAACATATGTGGAAGGTT CCACTTCACTCACCAGATTCACTCAATAGGTGGGCCAGGAGCCAACTCTTTAAGATCGGGGATACTCTTGTATTCAAATATGATAACAGAACAGAATCAG TGCACGTAGTGAATAAGGAGGACTATTTAGCATGCAATACATTGGGGAATCACACAGTATTCCGAGACGGGCATTCCAAGTTCGAGCTTCGGGATTCAGG GCCAATTCACTTCATAAGTGGATCACAAGATCATTGCCAGATGGGGTTAAAGCTAGTTGTGCTGGTCATGTCTCCTAGCCATGCTGGTAATGAAACTGTT CATTCCCCGCCTATCTCGCTCGCGCTACCTTCACCCGGACCCTCTGCACTCTCACCAAGTATTAATCAAGCTGTTCCACACACTTCAAATGCTGTATTCA TCTCAGCTGTCACGGGGTTGGGGGTTTCAATGCCCATGATCATATTCTTAAGTTGAGATTGAAACAATATATATGTTAATGCATTATATATTATAGTAAG ATGGACTAAAAATAAGTTATCATGTTAACACACAATAATTATTTACTGCAGAAGTTTTTCACTATTTAGCCCCATACCCAAAAAAGACATCAACAGTCTA GAGTTGTGTCAATTACTTCAACAGAGAGC BLAST |
| Tissue | flowers |
| Gene name | LI_gene_58280; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_61369
| Blastp | Nucleoid-associated protein At4g30620, chloroplastic from Arabidopsis with 65.8% of identity |
|---|---|
| Blastx | Nucleoid-associated protein At4g30620, chloroplastic from Arabidopsis with 65.22% of identity |
| Eggnog | Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection (By similarity)(COG0718) |
| Kegg | Link to kegg annotations (AT4G30620) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019463223.1) |
| Pfam | YbaB/EbfC DNA-binding family (PF02575.15) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |