Ll_transcript_60206

• Id Trinity: FTRINITY_DN56244_c0_g1_i18
• Name Transcript: Ll_transcript_60206
• Sequence: CACAACCTGTCTCCATGTACCACCTCTTTCTACACATTACTATATTCTTTCACAGCTTCTTTCCTTCCCCATTGATCAAGGGACGGTTTCATATACCCTT TTGCAAAATAAAAACAGTTACCTGAATTTCCATTCTTTAGATTAAGGTTGTGCTGTTTTTCTCTGTGGTCCATTTCTCCACTTGCAATGTCAAATGATAA TAACCAAGGTCCTGGGACCTGTGAAAATAGAGAAGATATCTCAATTCAAAAGGACCAAATATCATCTGAAATAACTGAGGAATTGCCAAGTGAACAGCAT GGAACAAGGCAAAACCTTAACTTGGACATATCCACAAGAAAGCTCGAGGAAGCTGAAGAACACCTTTTCAGAATAAACATACCTCCAACTCCACCACCTC CCGGAACAGTATACTATTCCCCTTATCCAAGCTCTGGTTTCTCTCGAAGCCACGAAACCCCGGGTCCTTCCTCGTCAAAAAGTAGATCAACTATTAAGAA CTTTCTCACGAGACTAAGTTTTAAAATTCACAACAGCAATTCAGAGATTGAAAAGGCTTCCTTCCTAGCACTTCAAGGTTCATCCAAAGTGGCACCTAAA AAGCTTTTTATTTCAAGGACATTATCTCCTTCAAAGCTTGCCGCAGGTACAGCGAACACAGCATTATCCTTACCTGTAACCCCAATTGCTCATTCAAATC AAGACTCTACACATGGAGGGAACATAGCTTCTATAGCAATATCTGTTGAAAAGGGAATGAATTTACCAATTCATCGTTCCCATTCAGTTCCTGATTTTAC CAGAGACGATAATGTCGGTTGCATGTTTGGTATGGTTTCAACCACACCAAGATTGGCTGAGAAAACTGTCACAAGGACGACTCCAACATCTATACCTGAT GATACTGTTGAAAATGAGGACGGCGGTGAAGATATTCCTGAAGAAGAAGCTGTTTGTAGAATTTGTATGATTGAATTGGGAGAAGGTACTAATACTCTTA AATTGGAGTGCAGCTGCAAAGGTGAACTATCATTTGCGCACCGAGAATGCGCAGTTAAATGGTTTAGCATTAAAGGTAATAGAATTTGTGATGTGTGCAA GCAAGAAGTTCAGAATCTACCGGTCACTCTTTTACGAATTCAAACTGTTCGGGGGCACAGAGACCAGGAAGATGAGATTTCTCAACACAGATTTTGGCAG GATGGTTCCATTCTTATCATTGTCAACACACTGGCCTACTTTTGCTTTCTTGAGCAGCTTCTGGTTTCAAAAATGGGATCTAGTGTAGTTGTAATGCCAC TCCCTTTTTCTTGTATACTAGGTCTTCTTGCAAGCGTGGCAGCTAGAACAATGGTGAGGAGAAAAGATGTTTGCGTTTATGCAACTGTTCAGTTTGCTCT GGTGGTTCTGGCTGGACAGATTTTCTATTCATTGATTCATATGCCAGCTGTTCTAGCTATCCTACTTGGTACAGTCACTGGCTTTGCAATTGTAATGTGT GGAGCTTCTATACTTGCTGTGATTTTGAAGTGGAATCAACAGCATGATTCCCAGCAGGCGGTACTTCCCGATCAATCATCATCGGCAGCAGTTCATCAAC CCCATATTGATTCTGATCACCCTGAGTAATTTAGGAGACTCTCCTGCAATTGTGAGCTGAAAGAATATTGTCCATCGTATTTACTTTAAGGATGGCATCA TTAGGTGTTTGGTTGTACATAATGTATAGACAAGTTTGAGCACATTACATTATACCTCTCCTTTTTCAAGCAATGATACAGAGGTTGAGAAAATGAGGAT CACATCTTTTGTCCAAATATGTGTACCACTCCATGTACCCTTTTATTCTTATGGGTCGAAAATGTAAATTTATATATTTAATTCATATCCCAAAAACAAA AGGTTGATTATTCTTTTTATTTTGATATGTATACATATATATTTAGTTGATTGCCCTATGAAAGTTAATCTTTTCATACAAAAAAA
• Tissue: flowers
• Gene name: LI_gene_58527;
• Additional information: details;

Expression of Ll_transcript_60206

FPKM

• FPAB: 0.6
• FPNAB: 0.2
• LF1: 0.2
• LF2: 0.3
• LF3: 0.4
• LF4: 0
• UF1: 0.7
• UF2: 0.6
• UF3: 0.5
• UF4: 0.3

Labels

• FPAB: abscising flower pedicels
• FPNAB   : non-abscising flower pedicels
• LF1: lower flowers stage 1
• LF2: lower flowers stage 2
• LF3: lower flowers stage 3
• LF4: lower flowers stage 4
• UF1: upper flowers stage 1
• UF2: upper flowers stage 2
• UF3: upper flowers stage 3
• UF4: upper flowers stage 4

Annotations of Ll_transcript_60206

• Blastp: E3 ubiquitin-protein ligase MARCH7 from Rattus with 29.17% of identity
• Blastx: E3 ubiquitin-protein ligase MARCH7 from Rattus with 29.17% of identity
• Eggnog: (Membrane-Associated Ring finger (C3HC4))(COG5183)
• Kegg: Link to kegg annotations (311059)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019432271.1)
• Pfam: RING-variant domain (PF12906.6)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;