| Id Trinity | FTRINITY_DN56319_c0_g1_i13 |
|---|---|
| Name Transcript | Ll_transcript_218319 |
| Sequence | CTCGGGTTCGGGTTATTTTGCCGGAATATGACACGTGTAATTGAATTATGAAGTAAATATAAATTGAAGAGTTGCATCCACGTTCGACAACAGATATCGA AATTTGAACCCTATTCCTGTGGTTGGAATCGGAGTATCTGAGATTTCAGATCTAAACGACGTCGTTGCAGATCCAACTCCACTAATGGCTCCTTTCAGCG GTGATGAAACGGCTCCGTTTTTTGGCTTCCTTGGTGCCGCAGCGGCCCTTGTCTTCTCCTGTAATTCAATCCCTCTTTTTCTCAATTAGATCTATATTCC TCTTTTCACGATCTTTTTCTAGTTACTTTCGATTTTCAATTTTGAAACAAAATTTAATGTTCTATGCTTAAAATCATTCACTAACATCTTTTTTACGTTT GAGATAGCTGCTAAGGTTTCCAATTGTTAGTGGTTCAACATGCGTTTCGATCCTTTTCAAAATCGATGAACTTAAATAAAAGGTTTTTGATTTTATAAAT ATACATTTAATTGTTCATTTAATTAGCTAACTACAAATTATAGCTTAGGTTTTGTTTATAAACTGTATGAAATTTAATGAGAAGAATCCATGGTTAAGTA CTTAATTCTCGTTGGTAGTTGCGATTAGTTGTTTCGAAAGTGATTAATTGAAGAACCATTTTGTTGTCTTAAGTTGAATAAAAAATTGTGATCTTCTCTA TTAGCCCCTTTGATCTATTGAGGTTTATATCTTGCTAAGAGTTTTGTTTATATTGATGGAAGGTATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTC GGCGTGGCATCAATGGGTGTGATGAGACCGGAATTGGTGATGAAGTCGATTGTCCCTGTTGTTATGGCTGGAGTGTTGGGTATTTATGGCCTTATTATTG CGGTTATTATCAGTACTGGTATTAATCCTAAGGCCAAGTCTTATTATCTCTTTGATGGTTATGCGCATCTCTCCTCCGGTCTTGCATGTGGGCTTGCTGG CCTCTCTGCTGGTATGGCTATTGGTATTGTTGGTGATGCTGGTGTTAGGTATAATAATTCTTCTGCCTTACTATCCGATCTATCGTTAAACTATTCATAA GATTAATATTTTCAAACTGGTTTTTAGAAAACTTTTTTCTCTTATTTGCACTGATTTTAGAGTCTGTCAAATTTCATAGTGGCACCCAAGTACGGCACCC AAGTACCCAACCATAGTAGTCAATCTCGGATTGCGGCATGGAGTGTTTGACCCCGAAAACGTTATGGTGGTATGGTGGGATGGCTACTACCCTGAAGATA GTAGATATAGCCAACATAGTTATTCCTTTGCGTACTAATAAATTTATTATTTACAAACACAATTACCATTAATGAAAAACATGACTGATAACAAGTTTGT AATAACAAAAGCCATAACCATAGAGAGGTGGGTATGGTCAGAGAATGCTGAATCATATGCTGAAATGGAGCAAAAAGCTGCAAGGAAAAAGCATTGGATG CTCTGAATTTGGCAGAGCATCGTCAATGAGCTCCTAACTGAAAAACAAGTCATGGCTTGGCCCCACTATTCCGCCATACTGCTGTATTGACTACAGACCA CTCGTCGTGATTGGAATTTTTTTCTATCAATGAGTATATAGGTCCACGACTAGTTTACTTATTTACACTGCAGCGTCACAAGTTAACATGTTCCTAGCCT GTTTAACCATGAAATAGGCTATGATGCTTGATGGAACCTGTATTTTTCCCATCCTATCCTGTGTTTGCTGTTGTGAATTAGAGACAGGGATTTACCTTTT GAAAGTTTCGATAATTCCTACTCCCTCCATCCGAGGAAGATGGTAAATTTTTGTACTAATTTTACTAGGAATTTTACAGTCTTCATGGGACGGATTTAGT ATTAAAGTTCTTCCTTTTAGTAATTATTTTTATCCTTCCGCAGAGCCAATGCACAGCAGCCAAAACTATTCGTGGGAATGATTCTGATCCTCATCTTTGC TGAAGCTCTTGCCCTGTATGGTCTCATTGTTGGTATTATCCTGTCTTCTCGTGCTGGTCAGTCTAGAGCTGACTAAGAAAGGAGCACATTGAAAAATTCT GTGTACCCCATCTGTTTTATCCTTCTGATTAAAAAGGGTTGGGGAGGGGGCAAATTCTTAGTTGTGAGGTTAGTAATGGTCGGACAGCACTTGCGGGCTT CAACAATTACTTATTTTAAAGCGATTGCTTCACCAGCCATTTGGTGGTGTTTATTTGTACAAGTAGTCCTTCTTTGCTGAATAATGCTTCTTAAACTTAT TTTTTCCTTATGAAATGTATTATGCGATATAATGGTTTACATTTTATCTTTTAGCTGCTGAAACTGGTGCATGTAATGATTTGGTTGCAATGTAATTATA TGCATTAATGGGTCTTTCTTATTGGATATTTGTAGGCGCCTGAATTATACGTGCGTAAGTATGGTAAATATTTAAAATAAAAAAAGTAAAGTAAGATATG TATGGCACTGTTGTTTGCTTTAGTATTTGAGCCTAGTTACTTGCGCAACATGGGAAGCTAATCAACGCTGTATTTGGCATTATTAAATTCTATCCATCTT GTTTTGATGGTTATATTCACTTTCTGCAATTTTTTTGGTGTACACTTCTCTGATATTTAGTTGTCATTGTACTTATCTTTCCTTGAGCTGTAATTAGTAA TTACACTCATCTACTTCAGâBLAST |
| Tissue | flowers |
| Gene name | LI_gene_59147; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_218319
| Blastp | V-type proton ATPase subunit c2 from Arabidopsis with 94.17% of identity |
|---|---|
| Blastx | V-type proton ATPase 16 kDa proteolipid subunit from Gossypium with 95% of identity |
| Eggnog | F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation (By similarity)(COG0636) |
| Kegg | Link to kegg annotations (AT1G19910) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_020978713.1) |
| Pfam | ATP synthase subunit C (PF00137.20) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |