| Id Trinity | FTRINITY_DN56332_c5_g2_i4 |
|---|---|
| Name Transcript | Ll_transcript_218636 |
| Sequence | GGAAAGGTGTTGATTGATTTTCCTTGAAGGAGATTCTTGTGGATAAGAAATCCCAGGTGGCAATTGTTGAGTGGAAGATGCAGATTTTGGTGCAGAGAGA GAAGATAAGGCATGTTGACCTGCTGACCCATGTGCAGTGTGCAGACCACGTGTTGCTGGCTGGTTGGGCAACATGGGGCCAACTGCAGTGGAAAGAACAG TGCGTGCAGGTAGCCGTTTGGCTTCAGCCACGCGTGGGACGCGTGTCACCTCGTCAGTGGCGTTGAGGGAGATATTTTGGGGAAATTGATTCCAGAATTT ATTGTGTGATATGGGAACCGTGGAGGCATGTTTAATGTCCTCGTTAATGAGTTGTTTTGACCCCAATATAACAATATTTCCTCCAATAATAGAATTTGAA ATCTGGGCATTTTTATTGGTGTCCTTTATAGTTGTTGTATCTTTTTTTTTTCGTGTGGCTTTGGTGTTAAAGTAGAACTTAGTAGTTTTTTTTGTTTCTT ATCTAGTGCAGACTGAGTTTTGCTTCTATCTTCTCCCTCTTCTTCACTTTCTAATTTTTTTCTTAGTTCCTCCGAATTTAATACAGGCTGAGACTGTTTA TTCATGGAAGGAGTTCCCTAAAACGGTTTAAGCTTTGATACATGAAAAATCGGATGTGCTTGAGAACCTTCCGGTAGTGCAAGTTCATATGCCACCATTC CGATACAGCGGAGTGTCTGGGAGATATTAAGTTCGTGCTTTGAGCTTCGTCCGAAGGTATAATCTATTATAGTCGGGGGAAGCCTTCCATATAGAGCTTA GAATGGAGTCATATTTGTAGATGAATGCTTAGAGGTATTGTACCAATACTCTACAAGCGACAAGAATGTGAACCACTTTTTGGGATGGTCACTTGTGAAA CACCTCATGCGAAAAAATTCCTTCCAGAAACTACTCAAGAACAATTTATCTCGATTTGACACAATAGTTCTAGGAATGTCATGAAGGCGAAAGATGTCAG CAGTAAAGCGACTGGCTAATTGTGTTGCAGTAAATCGGCTTGGCAGTTCTACAAAATGGCCATATTTGGTCAATCTATCCACCACAATCCATATCACCGT ATGCCCAAATGATGGAGGAAGGGAAGTAATGAAATCCATGAAGATGTCTTCTCAAACTCGGTGAGGCAAAGGCCAAAAGAAGGAAGCTGCCATTCTGGCC ATGGTCGGTTTGAGGCCCGAATGCCCGGCTGTCGGGGTGGAGTGATATTCATAAAGTAATATGTCTCGCAACCCAATATCAGCAAATATATAAAGTCGTG TTTTGTAGTATAACAACCCATTTTTTTCATGATAAATCTTAGTAGAGGATTTCAGAAGTTTTTCCACTAACTGTTTTCATTCTGGCGTGGAATAAAACTG AGCAAGCTGAGTCAAAATGGATGGGACCGGAGAGCTCAAGGACACTAGAATTGATTCTGATGACTGACACTGGGATAGAGCATCTGCAACTCTATTCTCT CGCCCAGGTTTGTAAAATATCTATAATGAAATCCTTGTAATTTGGTTGCCCATCTTTGTTGTTCTGTGGTTTGTAAAGTCCGAGTCAACATGTGTTTCAA ACTTTGTTGGTCTGTAAATATGCGAAAATATCTGCCAAGTAAATACTGACACCATTTTATTATTGATTGTGTAACAACAAATAGTTCCCGGACATAAGCG AAGGCAACTTGCATTCGAGTCGACAATTTCTTGCTGAAGAAGGCTATTAGGTGACCATTTTGCGACAATACTGCTCCAATAGCTAAGGCGGATGCATCTG TCTCAACATCAAAGACAACATTGAAGTCTGGAAGGACTAATACTGGACTTTGTGTCATTTTATGTTTCATTTGTGTAAATGCATCTAGTGTTGTAGAGGA CCATGTAAATTGGGACTGTTTTAATAAATTTGTGAGTGGAGCGACGTGAGAAGTGTAGTTTCGAATGAAACGACAATAGAATCCAGTCAGGCCCAAGAAT CCACACAAATGTGTCAATGAGCACGGAATGGGCCACTCAACAATGGCTTGGATTTTGTCGGGGTCAGGTTGAACCCCCTAGGCTGACAAAATATGGCCCA AGTATGCAACTGACTTCACACCAAACATACACTTAGACATTTTATCATAAAATTGATGATCAGATAGCAAGTTTAAAATTAATTGTAGGTGACTAACATG CTCTTTTAGCGTGGGGCAATAAACCAATATATCATTAAAAAAACCAGCACAAACTTGCGTAAATAGGGTCACAGTAGGTCATTCATTGCAGACTGAAATG TAGATGGGGCATTTGTAAGCCCAAAAGGCATCACTAATAGTTCATAGTGCCCATCAAAAGTCGGAAAGCAGTCTTGTGCGTATCTTCTGGTCTTACCCGA ATCTGGTGATATCCAGATTTCAAATCAATTTTTGAAAAGATTGAGGCGGTTCCAACTTCATCGAGAAGTTCATCAATAGTGGGAATCAGAAAACGATCCT TCACTGTAATAGCATTGCGGCTACGATAATCAACACAGAACTGCCATGTTCCATCTTTCTTTCTCACTAACAACACCGAAGAAGAAAAATGACTTGTACT TGGGATGACAACCCCTTCATGCAACATATCAGATAACAGTTTGGTCATGTCATCTTTTTGGTGGTGTGAGTATCTATATGGTTTAACATTAACTGGTTGA GATTTGGGCAGTAGGGTAATGCAGTGATCATGTGGTCGGGAGGGAGGTAATCCTTTAGGTGAGTTGAATATGTGGGTAAAGGAGTCTAGGATTGCTTGAA TTTCTTGGTTTGTAGGGTTGGGTGAAAGAGTGTGGGTAGGCAGTGTGGAAGTTGTAGGTGGGTTTGGTTCTGGAAAGGAAATACAAAACATTTCTACAAT AGAGTCGGTGTGAGAGAGTCTGCTTAGTTGGTTTAGGGAAGCTATATGTGGTGGTTGGGAATTTTGGTCTACGAGAGTAATGGTTTTGTTGTCATAATAG AAGGACATCGATGGTATAGCAAAGTCGGAGGTAATAGGTCCAAGTGTTTGTAACCACTCAATACCCAAGACCAAATCTGCCCCTTGGATAGGTAGTAAGT AGAATGGTACAAGAAAAAGTTGTTGTTGCAATTGTAGTGGAGTTTCTTTGCACACACCGGTGCAATAAATATGATCTCCATTTCCCACCATTACTGGAAA TTGAGGGGTAGGAAAAATATCCAATATGAGGAACTGTGCTATTCGTAGTTGCATAACATTATGAGAACTGCATGTGTCAACCAGCACATGAACCGGATAA CCATGAATAAGACCCTGAAACTTGAGTGTCCTAGGCGAAGGATTGCCTTTGAGTGCTTGGGCAAAGAGTTGAAAATAAACCAATTCTTCAAGGTTCTCCG GTGGAGAATTTTCTATGGTGATAGTATGAGAAGAGTCCATCTGTGTTTCCAACCGTGAGTCTAGATTGCATAGCTCAGTAGGATCATCATCGGTCACAAA CAAGAAAAATTATTTAGGTTGGCATTTGTAACCAAAAATGTATTTCTCATCACAGTGATAACAAAGACCATGGGCCCTTCTTTCTTGCATCTGGGATGTT GTTAAACATTTAATGGACACTTTATTTTGTGGTGCAGAAACAAATCTAACGGTTGATGTGACGTTGTGCTGAGTAGTGGGTCTTGGAAAACGTGCCATTG GTTTTTCATCATTAATTTTACTCTCAATCAACTTAGCTAAACCCATAGGATGACTAATTGAATGAGGTTGTAAAATTGCCAATTCCCTCCGAATTTCCAC TTTAAGACCAGAAATAAAACAATTTAACAACATTTAAGGGGAAAACCTACCACTTTGTTAGAAAGCTTTTCAAAGCGCCTCTGGTAATCAGTAACTGTAG TAAATTGCCTCAACTTGAACAACTCTGCTTGTGGTTATCATAAGCTGATGGACCAAAACGTTGTTGTACGTCCCTAGTAAAATCATCTCAGGTTGTGAGT TGCTGATTTTGGAACATTCATTTATACCAATTGGGTGCTTCTCCTATCATTGAAAAAGGCATTAACTCCATACGTTTTGGAGGAGTAATCTGATATAGTT GAAAGAATTGTTCCGCCTGGAAAACTCATTCCAATGGTTCAAATCCATCAAATGAGTGAAGGTTTAATTTTAGGGGTTTGAGATTAGAATATGGATTGGA GGTAGAAGAGTGAGTGGAGGTGGAAAATGACTGGTTAGAGAAACCAGGGGGTGGAGAAGGAGGTGGTTTAGGTTGGATATGAGATTTCAAATCTGAAATG ACAAATTGTAGCTCTTCGTGTCTAGTGTTCATGGTTTGTTGCATAAGTTCTTGTCTTGCAGCAAAATAGAGCTCCATAGAGGAGAGTTTCTCCATAATGT TGCTCAAAGGATCATCCAAGGGTTGAGAAGTGTTTTTAGGAGGCATGAGGAAGTTGAAAGCACCAAATTGATAGAGGTTTCTATCAATGAAGTTAATAAT TCTGGAAATTTAAAGAGAATAAAAGAGATTGAGCAATGCTCTAGATTTTTCATATATTCATCGATGGAAAGCTGCTCAATTTAAATACAATAAGCAAACC CTAATTA BLAST |
| Tissue | flowers |
| Gene name | LI_gene_59252; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_218636
| Blastp | Transposon Ty3-G Gag-Pol polyprotein from Saccharomyces with 41.38% of identity |
|---|---|
| Blastx | Retrovirus-related Pol polyprotein from transposon 297 from Sophophora with 35.86% of identity |
| Eggnog | - |
| Kegg | Link to kegg annotations (YGR109W-B) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019438985.1) |
| Pfam | Retroviral aspartyl protease (PF08284.10) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |