Ll_transcript_219481

Id TrinityFTRINITY_DN56385_c0_g2_i1
Name TranscriptLl_transcript_219481
SequenceAAGCCATAAAGAAGTTCAATGTCTCAAAAAATGCACTTGCACAAGTTGCATGGAACTTTGTCAATGATGGGTATGATTAAGTTGTCAATTTTTTATATTA CCTTGTTGATTCAATTTTATTAATGTTTGTTTGCACCGTGGAAAGTGGCTTTCAGGTTGAGGACATCTCTCTTTTTGCAATTCAAGCCACATCATATTGC AGCTGGTGCCATTTTCCTTGCTGCCAAGTTCCTTAAAGTGAAGCTTCCATCAGACGGTGAAAAGGTTTGGTGGCAAGAGTTTGATGTCACCCCACGCCAA TTGGAAGAAGTTAGCAATCAAATGCTGGAACTCTATGAGCAGAATAAAATTCCACCATCTCAAGGAAGTGAAATAGAAGGAACTGCTGGAGGGACAAAAG CTGATGTGAAGGCTCCTGCTGTGAATGAGGAGCAAGCCTCAGAGCAAATATCATCTCATTCTGCCGCGAAACACTCATCTGCAGAAAAGGTTGAGGTACC ATTAAGAGGAACCGAAAACCAAATCAATGATGGGAGTGCTGAAATGGGCAGTGATATCACTGATCACAAGGTTGACTTAGAAATTGGGGATAGTCATAAC TCCGAGCCCCAGCAGCAGCCTAAGAAAGATAACAAGGGAGAAGTGGCAAATAGATCCAAGTCTGTGACTGAACAAACAAGTGCAGAAGACCAAGATCAAA ATTTGGAGCATCGGGAAGGCCTGCTCAATTACTCACCCAAAGATGCAATCAAGATGATTGACAAAGACAAAGTGAAGGCTGCCTTGAAGAAAAGGAGGAA GGAGCGAGGGG BLAST
Tissueflowers
Gene nameLI_gene_59695; 
Additional informationdetails; 

Expression of Ll_transcript_219481

Labels

FPAB abscising flower pedicels
FPNAB    non-abscising flower pedicels
LF1 lower flowers stage 1
LF2 lower flowers stage 2
LF3 lower flowers stage 3
LF4 lower flowers stage 4
UF1 upper flowers stage 1
UF2 upper flowers stage 2
UF3 upper flowers stage 3
UF4 upper flowers stage 4

Annotations of Ll_transcript_219481

BlastpCyclin-T1-4 from Arabidopsis with 33.13% of identity
BlastxCyclin-T1-4 from Arabidopsis with 48.87% of identity
EggnogComponent of the Mediator complex, a coactivator involved in regulated gene transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. Binds to and activates cyclin-dependent kinase cdk8 that phosphorylates the CTD (C-terminal domain) of the large subunit of RNA polymerase II (RNAp II), which may inhibit the formation of a transcription initiation complex(COG5333)
KeggLink to kegg annotations (AT4G19600)
CantataDB-
Mirbase-
Ncbi proteinLink to NCBI protein (XP_019419549.1)
Pfam-
Rfam-
GOLinks to GO: General; Genes and gene products; Annotations; Ontology;