Ll_transcript_201041

• Id Trinity: FTRINITY_DN56462_c2_g3_i3
• Name Transcript: Ll_transcript_201041
• Sequence: TATTACTTCATTCCTTATTTATTTATTGCAAGTTGGAAAAGGCATGAGTATGAGAAGGCGGTAGAATTTGTGCGAAAGCCTCCAAAGCAGACTTTGACAG TGAAAGAAAGAGAAAATCAGAAGAAGAAGAAGATGAGTGATACTGTGTGGGAGGGTGTAATAGAGTTCACGAAGTGGGCCCAATCAAAAAACACAGACCC AGTGTTATGGGCGGTTGAACTGAGCTCAACCCTGACCTCCGCCGCCGTAAGTCTACCATCGACGGAGCTCTCACGGCGGCTGGTATCACACATATGTTGG GATAATCACGTGCCTATCACGTGGAAGTTTCTTGATGCAGCTATCTCTCTAAACATCGTTCCTCCTTTCCTCGTTCTCTCTCTCCTCTCCACGCGCGTGT TCCCCAAACGCCATCTTCACCCTTCCGCTTTCACTCTCTTCCTCTCTCTCCTTAAACGCCACCTCCTTTTCTCTCTCTCTTCTTCTTCTAACATCAATTC CCCGAATTACCCTCACATCATGGAATCTGTTCATCACGCGCTTCACCTTTCCGATCTCGATCCTGAACCTGGTGTTGTGCTTGTTTGGTTCTTGTTTACC ATTCTCTCTTGGCTTCTAGAAGCTTCCTTGGACGATGAAGGATTACTCGAACACAAGCCTACGTGGCTCCACCATGATGATGATGATGATGATGGTGATG ATGTCATTATGTCTGAGCCTGAGAACGAGGCTCTGTTGAGGAAGAATACAGGAATGACTATTGAGCTCATTGCATTGTTTCTTCAAAACAAACTCACATC AAGAATCCTTTCCTTGCTTCATAAAAACATGCCAACACATTGGGAAACTTTTGTTCACCAACTACAGCGACTTGCCGCAAATTCGTTAGTTTTGAGGAGT TTGAAAAATGTTACTCCCGAGTCTCTTTTGTCGTTTACTATCAAGTCCGATGGGCTGAAGCTGTTGTCTTCTCAATGGAAAACAACACATAAGCTGGAGC TTAATGCAGTCATGGCTGCCGGTGCTGCCTCTCAGATATCGTGTGCACTTCAAACTCATGATGATAGCTGGTCTTTGCTTTGGCTTCCCATTGATCTTAT CCTTGAAGATGCAATGAATGGTGATCATGTTGCCGAAACTAGTGCTGTTGAAGTTCTTACCGGGTTGGTGAAATCTTTACAAGCAGTTAATGGTACTGCA TGGCACAATGCATTTTTAGGCTTATGGATGGCAGCACTGAGACTAGTTCAAAGGGAGAGGGATCCAAGTGAAGGTCCTGTACCTCGCCTAGATACCTGCT TGTGTATGTTATTGTGCATTACAACCCTCGTGGTCGCTAATATTATCGAAGAAGAGGAAGGTGAATTGATCGTAGAAGCTGAGCGTAGCCCTACAAATCA AAGGAAGGACAAACCTGCCTTGGGAGAGCGTCGAGGGGAATTGGTTATCAGCTTACAGCTATTGGGTGATTATGAGGGCTTACTGAATCCGCCTCAACCT GTTACTTGGGTAGCCAATCAGGCTGCTGCCAAGGCTGTTATGTTCGTATCAGGTCATGCTGTTGGTAATGGATACTTGGAGAGTATGAATGTGAATGACT TACCCACGAACTACTCTGGTAACTTGTGGCATCTGATTGTTGAGGCTTGTATTGCAAGACATCTGCTTGATACTTCAGCTTATTTTTGGCCTGGTTATGT CAGTGCACCTTGCAATCAAATACCTCATAGCATTCCTAACCACCTGCCTAGCTGGTCATCATTGATGAAGGGATCACCACTAACTCCTCCATTGGTTAAT GTCTTAGCCGCAACTCCTGCTTCTAGCTTAGCAGAGATGGAGAAAATATTTGAATTTGCAATCAATGGCTCTGATGAAGAAAAGATATCTGCTGCTACCA TACTTTGTGGGGCATCTCTAGTACGTGGTTGGAATGTACAGGAACACATCATTTTTTTCATGATAAAGTTGCTCTCACCTCCGGTTCCTCCAAAATACTC TGGTACTGAAAGCCATTTGATTAGCTATGCTCCACTTTTGAATGTCCTTCTTGTTGGAATTTCACCTGTAGATTGTGTTCAGATATTCTCTCTACATGGT GCGGTTCCATTACTTGCAGCTGTGCTAATGCCAATATGTGAGGCTTTTGGATCATGTCTTCCTAACGTCTCATGGACTGCTGCAACAGGAGAAAAACTCT CTTGCCATGCAGTATTCTCTAATGCATTTATTCTCCTGCTGAGATTATGGCGGTTCAATCATCCACCTCTTGACCATGTGATGGGGGGTGCTGCAACTCC AGCATTAGGATCACAGTTAGGTCCTGAGTACCTTTTGTTGGTTCGGAATTGTATGTTAGCGTCCTTTGGGAAATTACCGAGATTCGTAGTAAGCAGTAGA AGATTTTCAAAAATGATTAGTTTTTCTACAGATCCCATATTTATGGATTCCTTTCCAAAATTGAACATTTGGTATCGCCAACATCAAGAATGTATTGCAT CAACTCGCTCTGCTCTTGCACCTGGAGGCTCTGTTCTTCAGATTGTTGATGCACTACTAAGCATGATGTGCAAGAAAATAAGTAGAAGTTCTCAGGCATT GACACCTACAACTTCAGGAAGCAGCACTTCTTCTGGTTCTTCATTGGATGATGCTATGATGAAACTCAAAGTGCCTGCATGGGATATCCTCGAAGCAGCT CCATTTGTTCTTGATGCTGCTCTTACAGCTTGTGCTCATGGAAGGCTCTCTCCCCGTGAATTGGCTACAGGTCTCAAAGATCTTGCTGATTTTCTTCCGG CAACTTTGGGTACCATCGTAAGCTACCTATCAGCTGAAGTAACACGTGGCATATGGAAGCCAGCTTTTATGAATGGAACTGATTGGCCTAGCCCTGCTGC AAATTTATCAACTGTTGAGCAACAAATCAAGAAAATTCTAGCAGCCACAGGTGTTGACGTCCCAAGCCTTGCTATAGATGGGAATGCGCCAGCCACACTT CCTTTGCCCTTGGCAGCTTTTCTAAGTCTCACAATAACGTATAAACTGGACAAATCTGCTGAGCGCTACCTTATCTTGACTGGCCCAAGTTTGATTACAC TTGCTGCTGGCTGTCCCTGGCCATGCATGCCGATTGTAGGTTCTTTGTGGGCTCAGAAGGTGAAGCGTTGGAGTGACTTTTTCGTATTCAAAGCTTCCGG AACAGTCTTCAACCACAGCAGGGATGCTGTAGTTCAGCTCCTAAATAGTTGCTTCACATCCACCCTTGGCCTTGGTTCTTCCTGCATTTATAACAATGGT GGTGTTGGTGCACTCCTTGGTCACGGGTTTGGTTCTCACTTCTCCGGTGGGATCTCTCCTGTAGCACCGGGGATTCTCTACTTAAGAGTTTACAGGTCTA TTAGAGATGTTATGTTCTTGACAGAAGAAATTGTATCCCTTTTAATGCTTTCAGTTAGAGATATAGCAAGTAGTGAGTTACCCAAGGCCAAAGGGGATGT AAAGAAAACTAAGCATGGTATGAAAAATGGACAATTTTCTCTTGCAAGATCCATGCAACATGTAAAGCATGCTGCTCTACTTGGGGCTTCATTACTTTGG ATATCTGGTGGACCAAAGTTGGTTCAATCATTGATGAAAGAGACTTTGCCTTCCTGGTTTTTATCAACTAATATGTTGGAGCTGGATGGTGGAGAATCTG GAGTTTTGGTTGCTATGCTTAGAGGTTATGCACTAGCATACTTTGCTATATTTAGTGGGACATTTGCATGGGGCATTGACCATTCTTTTATATGTTCGAA ACGACGGGCAAAGGTTCTCAGCAGGCATGTGAAATTTCTTGCAAGCACCCTGGACAAGGAGATATCACTTCGTTGTCATTGTGCTACTTGGAGAGCTTAC GTGACAGGTTTTGTGAGCTTGATGGTGGCTTGCACTCCATTGTGGGTCCCTGAAGTTGATGCTGATACATTGAAGAGACTTAGCAGGGGATTAATAAGGT TCAATGAATATCAGTTGGCTTTTCGCCTTTTGGAACTTGGAGGGATACCTGTCATGGCTGCTGCGGCTGAAATGATAATTGAACTTCAACACACATTTTA AATCTTTTTACAACTAGGAACTACTTACTATATTCATTTCTTTACCTTTTTTCTTTAAGTGTAAGGGATGAAGATATCCCATTCAAAAACGGATGATCAT GTTAGATAGATCTTTTCACTTGATTGAAACTTATATTAATGCTACTTTTAATATGTGTTGATAGGATATATAAGATAATGGATGAATATGAACTAATTAA CATGATAAGCACAAGAATCCTTCAAATTTAAGCACTTGATTTAGTGAATATGTGATGTTTCCAAAACTGTATTTTAATTTTTTTAGTAAATGAAATTGTG CTCTACCTACATATTAGAAGAATTCGTTACTTTTTTTTAATATCTACTTGCATCGTAGAGATAAAATGCACTCTAAAACTACAGCAGTCTTGTGCCACAT GATTAGAAAACCGTAGTTAGAATAATAGGAAGCGCTAGATTAATTGTTATGGTTGTTTTTAAGCATGTTAGGAAAAGAGGGGAATTGCTAAGATTCTGGA TTTTTGGTTAACATGTTAAGTTAAGATGATGACTTTTGTGGAATTTTTATCAGTGTTCATGTCCAAGTCCAACTCATATCGCTGAACCACAAATTCAAAA AATAATCAAATTAAAAAAAAGAGAGAGTCAGGGTAGTCTATATACAATGGGTTGAGTCTAAAATTAGAAAAAAAGAGTGAGAAAATAGGATCAAACAAGA GGTTTCACATCTTCAGAAGAACAAAAAAATGGGTGCTTCACAATCAGTCTCAACCCAATCCATTCATGAATTCACTGTCAAGGATGCAAAGGGCAAAGAC GTTAGCCTCAGGATCTATGAGGGGAAAATTCTCCTTGTTGTTAATGTTGCTTCAAAATGTGGATTTACGAATTCCAATTACACCCAATTGACTGATCTCT ACAACAAATACAAGGACAGAGGTTTTGAAATATTGGCATTTCCGTGCAACCAGTTTTTGAAGCAAGAGCCTGGGAGTAGCCAGCAGACACAGGAATTTGC CTGTACCAGATACAAGGCCGAGTATCCCATTTTTGGAAAGATACAAGTCAATGGGCAAGATGCAGCACCTGTCTACAAATTTCTTAAAGCACAGAAACCT GGATTTCTGGGGTCTAGTATA
• Tissue: flowers
• Gene name: LI_gene_60366;
• Additional information: details;

Expression of Ll_transcript_201041

FPKM

• FPAB: 3.1
• FPNAB: 4.7
• LF1: 3.5
• LF2: 2.8
• LF3: 3.1
• LF4: 2.6
• UF1: 2.7
• UF2: 2.9
• UF3: 3.4
• UF4: 2.3

Labels

• FPAB: abscising flower pedicels
• FPNAB   : non-abscising flower pedicels
• LF1: lower flowers stage 1
• LF2: lower flowers stage 2
• LF3: lower flowers stage 3
• LF4: lower flowers stage 4
• UF1: upper flowers stage 1
• UF2: upper flowers stage 2
• UF3: upper flowers stage 3
• UF4: upper flowers stage 4

Annotations of Ll_transcript_201041

• Blastp: Mediator of RNA polymerase II transcription subunit 33A from Arabidopsis with 55.84% of identity
• Blastx: Mediator of RNA polymerase II transcription subunit 33A from Arabidopsis with 54.74% of identity
• Eggnog: Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. Involved in the repression of phenylpropanoid biosynthesis. May compete with MED33B for common binding partners or for occupancy in Mediator(ENOG410XPER)
• Kegg: Link to kegg annotations (AT3G23590)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019442503.1)
• Pfam: -
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;