| Id Trinity | FTRINITY_DN56462_c2_g3_i5 |
|---|---|
| Name Transcript | Ll_transcript_201047 |
| Sequence | CTGGTAACTTGTGGCATCTGATTGTTGAGGCTTGTATTGCAAGACATCTGCTTGATACTTCAGCTTATTTTTGGCCTGGTTATGTCAGTGCACCTTGCAA TCAAATACCTCATAGCATTCCTAACCACCTGCCTAGCTGGTCATCATTGATGAAGGGATCACCACTAACTCCTCCATTGGTTAATGTCTTAGCCGCAACT CCTGCTTCTAGGTATGCTGCTGCCTCATGTTATATCTGCCCCACCTTCCCTGATAGGAAGTTGATTGGTTCAAGCAACCAATTAATATGGTTGTGTTTCT TCATATAAACAATATTTGTTGCTTTTCCTGATCACATGTGTGCTTTGTGAGTTGTGACAGTTGCTTTTTTCAATGTGGCAAAAGTAAAAAATATTAGCTC GTCTGATTTTTTATTTTTTGGTTTCCCTTTTTGTTCTCTTCTCATTACAGCTCCTATCTCCTAGTTGTGTTTTCATCCTTGTTTTTAGTTGATAGTGTGG TGTTTGTTTTCCAAGCTGTTACATGCCTCTGTATCCAATGAGCTTGATCATAAATTCGATTATGAATCCCATTGGGTTTCTGCCATTTACTCTGCTGATC AAGATAACCCTTAATGGATTAGCATCAATATTTTGAGCTTTTTACTGTAGATTCGTGTATCCCTTTACTTCAGTTGCTACCCTGAATGAAGTAAATATTT TGTTAATGCTATCATTGGTGATTCAGATTCCATTTTTTTTGGAAAGCAGAACTTGATTTTGTTGTTTTTTATTCTCTCTCACTCACCAAATTAATCTCTA GATGTTTGTTGGCATAAGCTAATTTCTTCAACAGAACTTATCCACAGCATGTAGTATTGTACTCAAGGGAAACCTTTGCTGTTTCAGCATGTGTATTGGT CATTTGGTTGTGCCGTTGTTGTTTCCTTCCTATTTCTGTATCATTTTTATAAAAAAAAATATTAGCATGGAATCTATTCATCCTGAGACTGAAATGGTCG AGATGAGTTTGGCCGTTTGGGTAGATGTAATCTATTCATCTACTCTTCCTAGTTGTTTCAAGTTTTGGCAAAAAAGGGAATGTATTCATCTCCAGTCTTA TTTTTCTTTCTACCTCACTCTTAGACACAACCATTTTTTAATAAAGGTATCAATATATTTTTTCATAATGTAAGTCTTGTTTGGATAAGATAATTCTCCC TGTTTCTTTGTGGGTTTATGCACATGCGCATGTCTTTGTTCTAAAGGGGTTTCTTTGTTGCACACTCAAGAATTGACCTCTTTTAAGGAGTACCTTTTCT TAATGTAGCTTGGGCAGGGTTTTACCTTGTCTAACTCTATGGGCTTTATTACTCGTACAATTTTGGATAATGGAACTTATTTAATCTGGAAAAGAACAAT ACAAAAATACTCGTCTCTATGGCAAAGCAGGGATAGATGCATAGATATTGAATAGACACAGAAACATATGCATGCACTCATGGAGATGTGTGTATTTCAA AGTGGTATCTGTCTAATTGGCTGTAGTATATCAGATGCTCTATTTTGTATATTTAGTTGTGGTAATGCGACTGAATTTAAGCTCGTGAATTTCATGGAAG CTTAGCAGAGATGGAGAAAATATTTGAATTTGCAATCAATGGCTCTGATGAAGAAAAGATATCTGCTGCTACCATACTTTGTGGGGCATCTCTAGTACGT GGTTGGAATGTACAGGAACACATCATTTTTTTCATGATAAAGTTGCTCTCACCTCCGGTTCCTCCAAAATACTCTGGTACTGAAAGCCATTTGATTAGCT ATGCTCCACTTTTGAATGTCCTTCTTGTTGGAATTTCACCTGTAGATTGTGTTCAGATATTCTCTCTACATGGTGCGGTATGTTCAAATTTAATAATCTT TGTATTATGACTCATACATGCACATGGAAAGTGGGCTATAGTTTATTTTTTTCCTTTCAAGTAAGGGAAAATAAAATGAAGAGGCCAAGTGTTTGTGAAG AACCCCCACCCCAAAGAAAAAGGGGAAGTTTCTATGCTCAATTCACTTTTAAGTTATAACCAACAAAAAGCACTTTAAACACACTCTTTCTCATGGGGAC AGGGTATTTATGAATGATATTGCTGCATTTAGCTTGTTTCCTAATTCTGTGCAGTGATTTGCCAAATTCGTTCAGGTTCCATTACTTGCAGCTGTGCTAA TGCCAATATGTGAGGCTTTTGGATCATGTCTTCCTAACGTCTCATGGACTGCTGCAACAGGAGAAAAACTCTCTTGCCATGCAGTATTCTCTAATGCATT TATTCTCCTGCTGAGATTATGGCGGTTCAATCATCCACCTCTTGACCATGTGATGGGGGGTGCTGCAACTCCAGCATTAGGATCACAGTTAGGTCCTGAG TACCTTTTGTTGGTTCGGAATTGTATGTTAGCGTCCTTTGGGAAATTACCGAGATTCGTAGTAAGCAGTAGAAGATTTTCAAAAATGATTAGTTTTTCTA CAGATCCCATATTTATGGATTCCTTTCCAAAATTGAACATTTGGTATCGCCAACATCAAGAATGCATTGCTTCAATACGCTCTGGCCTAGTACCAGGCGG GCCAGTTCATCAGATTGTTGATGCTCTACTAAATATAATGTTCAGGAAGATAAACAAAGGTGCTGAAACTTTGACACCTATGCCTTTAGGAAGCAGCAGC TCATCCGGGTCTGACATGGATGTTGACGCCTTAGTGAAACTAAAAGTGCCTGCCTGGGATATTCTCAAAGTTATTCCCTTTGTGCTCGATGCTTCGCTAA CAGCTTGTGCTCATGGAAGACTCTCCACCCGTCAACTGGCTACAGGTCTCAAATCTCTAGCCGATTTTCTTCCAGCATCTTTGGTTACCATTGCAAGCTA CTTTTCAGCTGAGGTAACACGGGGAGTATGGAAGCCAGCTTTTATGAATGGAACTGATTGGCCTAGCCCTGCTGCAAATTTATCCCTTGTTGAGCAACAG ATAAAGAAAATTCTAGAAGCCACAGGTGTTGATGTTCCTAGCCTTGTTGTAGATGGGGACTCTCCAGCTACACTCCCTTTGCCTTTAGCAGCTTTTGTAA GCCTCACAATTACATATAAACTAGACAAAGCCTCTGAACGATTACTTAAACTGATTTCCCCAGCTATGAGTGCCCTTGCTTCTAGTTGCCCTTGGCCCTG CATGCCTATTGTAACTTCTTTATGGGTCCAGAAGGTGAAGCGTTGGAGTAACTACCTTGTGTTCCTTGCTTCCGGAACTGTGTTCCACCACAACAGGGAT GCTGTAGTTCAACTACTAAGAAGTTGTTTCACATCCACCCTTGGGCTTGGCTCTGCCTCTGCCAGTATTTATAATAATAGTGGTGTTAGTGCCCTCCTTG GTCATGGATTTGGTTGCAAAATACCTGGTGGGGTCTCTCCAGTAGCTCCAGGGATTCTTTACTTAAAAGTTTACCGGTCAATTGGAGATACCTCCTTCTT GACTGAAGAAATATTGTCTATTCTAATGCTTTCAGTTAGAGATATAGCAAGTAGTGAGTTACCCAAGGCCAAAGGGGATGTAAAGAAAACTAAGCATGGT ATGAAAAATGGACAATTTTCTCTTGCAAGATCCATGCAACATGTAAAGCATGCTGCTCTACTTGGGGCTTCATTACTTTGGATATCTGGTGGACCAAAGT TGGTTCAATCATTGATGAAAGAGACTTTGCCTTCCTGGTTTTTATCAACTAATATGTTGGAGCTGGATGGTGGAGAATCTGGAGTTTTGGTTGCTATGCT TAGAGGTTATGCACTAGCATACTTTGCTATATTTAGTGGGACATTTGCATGGGGCATTGACCATTCTTTTATATGTTCGAAACGACGGGCAAAGGTTCTC AGCAGGCATGTGAAATTTCTTGCAAGCACCCTGGACAAGGAGATATCACTTCGTTGTCATTGTGCTACTTGGAGAGCTTACGTGACAGGTTTTGTGAGCT TGATGGTGGCTTGCACTCCATTGTGGGTCCCTGAAGTTGATGCTGATACATTGAAGAGACTTAGCAGGGGATTAATAAGGTTCAATGAATATCAGTTGGC TTTTCGCCTTTTGGAACTTGGAGGGATACCTGTCATGGCTGCTGCGGCTGAAATGATAATTGAACTTCAACACACATTTTAAATCTTTTTACAACTAGGA ACTACTTACTATATTCATTTCTTTACCTTTTTTCTTTAAGTGTAAGGGATGAAGATATCCCATTCAAAAACGGATGATCATGTTAGATAGATCTTTTCAC TTGATTGAAACTTATATTAATGCTACTTTTAATATGTGTTGATAGGATATATAAGATAATGGATGAATATGAACTAATTAACATGATAAGCACAAGAATC CTTCAAATTTAAGCACTTGATTTAGTGAATATGTGATGTTTCCAAAACTGTATTTTAATTTTTTTAGTAAATGAAATTGTGCTCTACCTACATATTAGAA GAATTCGTTACTTTTTTTTAATATCTACTTGCATCGTAGAGATAAAATGCACTCTAAAACTACAGCAGTCTTGTGCCACATGATTAGAAAACCGTAGTTA GAATAATAGGAAGCGCTAGATTAATTGTTATGGTTGTTTTTAAGCATGTTAGGAAAAGAGGGGAATTGCTAAGATTCTGGATTTTTGGTTAACATGTTAA GTTAAGATGATGACTTTTGTGGAATTTTTATCAGTGTTCATGTCCAAGTCCAACTCATATCGCTGAACCACAAATTCAAAAAATAATCAAATTAAAAAAA AGAGAGAGTCAGGGTAGTCTATATACAATGGGTTGAGTCTAAAATTAGAAAAAAAGAGTGAGAAAATAGGATCAAACAAGAGGTTTCACATCTTCAGAAG AACAAAAAAATGGGTGCTTCACAATCAGTCTCAACCCAATCCATTCATGAATTCACTGTC BLAST |
| Tissue | flowers |
| Gene name | LI_gene_60366; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_201047
| Blastp | Mediator of RNA polymerase II transcription subunit 33B from Arabidopsis with 64.45% of identity |
|---|---|
| Blastx | Mediator of RNA polymerase II transcription subunit 33B from Arabidopsis with 64.57% of identity |
| Eggnog | Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. Involved in the repression of phenylpropanoid biosynthesis. May compete with MED33B for common binding partners or for occupancy in Mediator(ENOG410XPER) |
| Kegg | Link to kegg annotations (AT2G48110) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019426144.1) |
| Pfam | - |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |