| Id Trinity | FTRINITY_DN56462_c2_g3_i6 |
|---|---|
| Name Transcript | Ll_transcript_201051 |
| Sequence | TATTACTTCATTCCTTATTTATTTATTGCAAGTTGGAAAAGGCATGAGTATGAGAAGGCGGTAGAATTTGTGCGAAAGCCTCCAAAGCAGACTTTGACAG TGAAAGAAAGAGAAAATCAGAAGAAGAAGAAGATGAGTGATACTGTGTGGGAGGGTGTAATAGAGTTCACGAAGTGGGCCCAATCAAAAAACACAGACCC AGTGTTATGGGCGGTTGAACTGAGCTCAACCCTGACCTCCGCCGCCGTAAGTCTACCATCGACGGAGCTCTCACGGCGGCTGGTATCACACATATGTTGG GATAATCACGTGCCTATCACGTGGAAGTTTCTTGATGCAGCTATCTCTCTAAACATCGTTCCTCCTTTCCTCGTTCTCTCTCTCCTCTCCACGCGCGTGT TCCCCAAACGCCATCTTCACCCTTCCGCTTTCACTCTCTTCCTCTCTCTCCTTAAACGCCACCTCCTTTTCTCTCTCTCTTCTTCTTCTAACATCAATTC CCCGAATTACCCTCACATCATGGAATCTGTTCATCACGCGCTTCACCTTTCCGATCTCGATCCTGAACCTGGTGTTGTGCTTGTTTGGTTCTTGTTTACC ATTCTCTCTTGGCTTCTAGAAGCTTCCTTGGACGATGAAGGATTACTCGAACACAAGCCTACGTGGCTCCACCATGATGATGATGATGATGATGGTGATG ATGTCATTATGTCTGAGCCTGAGAACGAGGCTCTGTTGAGGAAGAATACAGGAATGACTATTGAGCTCATTGCATTGTTTCTTCAAAACAAACTCACATC AAGAATCCTTTCCTTGCTTCATAAAAACATGCCAACACATTGGGAAACTTTTGTTCACCAACTACAGCGACTTGCCGCAAATTCGTTAGTTTTGAGGAGT TTGAAAAATGTTACTCCCGAGTCTCTTTTGTCGTTTACTATCAAGTCCGATGGGCTGAAGCTGTTGTCTTCTCAATGGAAAACAACACATAAGCTGGAGC TTAATGCAGTCATGGCTGCCGGTGCTGCCTCTCAGATATCGTGTGCACTTCAAACTCATGATGATAGCTGGTCTTTGCTTTGGCTTCCCATTGATCTTAT CCTTGAAGATGCAATGAATGGTGATCATGTTGCCGAAACTAGTGCTGTTGAAGTTCTTACCGGGTTGGTGAAATCTTTACAAGCAGTTAATGGTACTGCA TGGCACAATGCATTTTTAGGCTTATGGATGGCAGCACTGAGACTAGTTCAAAGGGAGAGGGATCCAAGTGAAGGTCCTGTACCTCGCCTAGATACCTGCT TGTGTATGTTATTGTGCATTACAACCCTCGTGGTCGCTAATATTATCGAAGAAGAGGAAGGTGAATTGATCGTAGAAGCTGAGCGTAGCCCTACAAATCA AAGGAAGGACAAACCTGCCTTGGGAGAGCGTCGAGGGGAATTGGTTATCAGCTTACAGCTATTGGGTGATTATGAGGGCTTACTGAATCCGCCTCAACCT GTTACTTGGGTAGCCAATCAGGCTGCTGCCAAGGCTGTTATGTTCGTATCAGGTCATGCTGTTGGTAATGGATACTTGGAGAGTATGAATGTGAATGACT TACCCACGAACTACTCTGGTAACTTGTGGCATCTGATTGTTGAGGCTTGTATTGCAAGACATCTGCTTGATACTTCAGCTTATTTTTGGCCTGGTTATGT CAGTGCACCTTGCAATCAAATACCTCATAGCATTCCTAACCACCTGCCTAGCTGGTCATCATTGATGAAGGGATCACCACTAACTCCTCCATTGGTTAAT GTCTTAGCCGCAACTCCTGCTTCTAGCTTAGCAGAGATGGAGAAAATATTTGAATTTGCAATCAATGGCTCTGATGAAGAAAAGATATCTGCTGCTACCA TACTTTGTGGGGCATCTCTAGTACGTGGTTGGAATGTACAGGAACACATCATTTTTTTCATGATAAAGTTGCTCTCACCTCCGGTTCCTCCAAAATACTC TGGTACTGAAAGCCATTTGATTAGCTATGCTCCACTTTTGAATGTCCTTCTTGTTGGAATTTCACCTGTAGATTGTGTTCAGATATTCTCTCTACATGGT GCGGTATGTTCAAATTTAATAATCTTTGTATTATGACTCATACATGCACATGGAAAGTGGGCTATAGTTTATTTTTTTCCTTTCAAGTAAGGGAAAATAA AATGAAGAGGCCAAGTGTTTGTGAAGAACCCCCACCCCAAAGAAAAAGGGGAAGTTTCTATGCTCAATTCACTTTTAAGTTATAACCAACAAAAAGCACT TTAAACACACTCTTTCTCATGGGGACAGGGTATTTATGAATGATATTGCTGCATTTAGCTTGTTTCCTAATTCTGTGCAGTGATTTGCCAAATTCGTTCA GGTTCCATTACTTGCAGCTGTGCTAATGCCAATATGTGAGGCTTTTGGATCATGTCTTCCTAACGTCTCATGGACTGCTGCAACAGGAGAAAAACTCTCT TGCCATGCAGTATTCTCTAATGCATTTATTCTCCTGCTGAGATTATGGCGGTTCAATCATCCACCTCTTGACCATGTGATGGGGGGTGCTGCAACTCCAG CATTAGGATCACAGTTAGGTCCTGAGTACCTTTTGTTGGTTCGGAATTGTATGTTAGCGTCCTTTGGGAAATTACCGAGATTCGTAGTAAGCAGTAGAAG ATTTTCAAAAATGATTAGTTTTTCTACAGATCCCATATTTATGGATTCCTTTCCAAAATTGAACATTTGGTATCGCCAACATCAAGAATGCATTGCTTCA ATACGCTCTGGCCTAGTACCAGGCGGGCCAGTTCATCAGATTGTTGATGCTCTACTAAATATAATGTTCAGGAAGATAAACAAAGGTGCTGAAACTTTGA CACCTATGCCTTTAGGAAGCAGCAGCTCATCCGGGTCTGACATGGATGTTGACGCCTTAGTGAAACTAAAAGTGCCTGCCTGGGATATTCTCAAAGTTAT TCCCTTTGTGCTCGATGCTTCGCTAACAGCTTGTGCTCATGGAAGACTCTCCACCCGTCAACTGGCTACAGGTCTCAAATCTCTAGCCGATTTTCTTCCA GCATCTTTGGTTACCATTGCAAGCTACTTTTCAGCTGAGGTAACACGGGGAGTATGGAAGCCAGCTTTTATGAATGGAACTGATTGGCCTAGCCCTGCTG CAAATTTATCCCTTGTTGAGCAACAGATAAAGAAAATTCTAGAAGCCACAGGTGTTGATGTTCCTAGCCTTGTTGTAGATGGGGACTCTCCAGCTACACT CCCTTTGCCTTTAGCAGCTTTTGTAAGCCTCACAATTACATATAAACTAGACAAAGCCTCTGAACGATTACTTAAACTGATTTCCCCAGCTATGAGTGCC CTTGCTTCTAGTTGCCCTTGGCCCTGCATGCCTATTGTAACTTCTTTATGGGTCCAGAAGGTGAAGCGTTGGAGTAACTACCTTGTGTTCCTTGCTTCCG GAACTGTGTTCCACCACAACAGGGATGCTGTAGTTCAACTACTAAGAAGTTGTTTCACATCCACCCTTGGGCTTGGCTCTGCCTCTGCCAGTATTTATAA TAATAGTGGTGTTAGTGCCCTCCTTGGTCATGGATTTGGTTGCAAAATACCTGGTGGGGTCTCTCCAGTAGCTCCAGGGATTCTTTACTTAAAAGTTTAC CGGTCAATTGGAGATACCTCCTTCTTGACTGAAGAAATATTGTCTATTCTAATGCTTTCAGTTAGAGATATAGCAAGTAGTGAGTTACCCAAGGCCAAAG GGGATGTAAAGAAAACTAAGCATGGTATGAAAAATGGACAATTTTCTCTTGCAAGATCCATGCAACATGTAAAGCATGCTGCTCTACTTGGGGCTTCATT ACTTTGGATATCTGGTGGACCAAAGTTGGTTCAATCATTGATGAAAGAGACTTTGCCTTCCTGGTTTTTATCAACTAATATGTTGGAGCTGGATGGTGGA GAATCTGGAGTTTTGGTTGCTATGCTTAGAGGTTATGCACTAGCATACTTTGCTATATTTAGTGGGACATTTGCATGGGGCATTGACCATTCTTTTATAT GTTCGAAACGACGGGCAAAGGTTCTCAGCAGGCATGTGAAATTTCTTGCAAGCACCCTGGACAAGGAGATATCACTTCGTTGTCATTGTGCTACTTGGAG AGCTTACGTGACAGGTTTTGTGAGCTTGATGGTGGCTTGCACTCCATTGTGGGTCCCTGAAGTTGATGCTGATACATTGAAGAGACTTAGCAGGGGATTA ATAAGGTTCAATGAATATCAGTTGGCTTTTCGCCTTTTGGAACTTGGAGGGATACCTGTCATGGCTGCTGCGGCTGAAATGATAATTGAACTTCAACACA CATTTTAAATCTTTTTACAACTAGGAACTACTTACTATATTCATTTCTTTACCTTTTTTCTTTAAGTGTAAGGGATGAAGATATCCCATTCAAAAACGGA TGATCATGTTAGATAGATCTTTTCACTTGATTGAAACTTATATTAATGCTACTTTTAATATGTGTTGATAGGATATATAAGATAATGGATGAATATGAAC TAATTAACATGATAAGCACAAGAATCCTTCAAATTTAAGCACTTGATTTAGTGAATATGTGATGTTTCCAAAACTGTATTTTAATTTTTTTAGTAAATGA AATTGTGCTCTACCTACATATTAGAAGAATTCGTTACTTTTTTTTAATATCTACTTGCATCGTAGAGATAAAATGCACTCTAAAACTACAGCAGTCTTGT GCCACATGATTAGAAAACCGTAGTTAGAATAATAGGAAGCGCTAGATTAATTGTTATGGTTGTTTTTAAGCATGTTAGGAAAAGAGGGGAATTGCTAAGA TTCTGGATTTTTGGTTAACATGTTAAGTTAAGATGATGACTTTTGTGGAATTTTTATCAGTGTTCATGTCCAAGTCCAACTCATATCGCTGAACCACAAA TTCAAAAAATAATCAAATTAAAAAAAAGAGAGAGTCAGGGTAGTCTATATACAATGGGTTGAGTCTAAAATTAGAAAAAAAGAGTGAGAAAATAGGATCA AACAAGAGGTTTCACATCTTCAGAAGAACAAAAAAATGGGTGCTTCACAATCAGTCTCAACCCAATCCATTCATGAATTCACTGTC BLAST |
| Tissue | flowers |
| Gene name | LI_gene_60366; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_201051
| Blastp | Mediator of RNA polymerase II transcription subunit 33A from Arabidopsis with 50.45% of identity |
|---|---|
| Blastx | Mediator of RNA polymerase II transcription subunit 33B from Arabidopsis with 64.57% of identity |
| Eggnog | Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. Involved in the repression of phenylpropanoid biosynthesis. May compete with MED33B for common binding partners or for occupancy in Mediator(ENOG410XPER) |
| Kegg | Link to kegg annotations (AT3G23590) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019426144.1) |
| Pfam | - |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |