| Id Trinity | FTRINITY_DN56488_c4_g1_i10 |
|---|---|
| Name Transcript | Ll_transcript_202372 |
| Sequence | AACTAAACTACATTTTCTGGTTTCATTCAAATAGGTTGCACCTGCGAACCACTCCATCTTTCTATGGAAGTTAATAAAATATAATCTTGTAATAAAAATG AACGTGAATGTTTAAAATTAAATTATTATTTTATGAAAAGTAAAATGTAAAGACATGAATTGAAAAAAAGGGTGTGGACAGAAAAGGGGAAACGAATTGG AGGGAAATCTCGGAGCGGAGGAAAGAGAGAGAACGATGCCGGTCGCGAGGCGAGAGACGTCAGATTGTAGAGTCATCGGTCATGTAGATATGGACTGCTT CTACGTTCAAGTGGAACAGAGAAAGGAACCAAAACTAAGGGGTGTACCCACTGCAGTAGTACAGTACAACTCATACAAAGGTGGTGGCTTGATTGCAGTT AGCTACGAGGCTCGTGCACATGGTGTTAAGCGCTCAATGCGGGGCGATGAAGCAAAGGAGGCATGCCCACAAATTCAACTCGTCCAAGTTCCGGTTGCAC GCGGTAAAGCTGATCTCAATACATACAGGAGTGCAGGTTCAGAGGTTGTTTCTATTCTTTCACGGAAGGGTCGTTGTGAGAGGGCTTCAATTGATGAGGT GTATCTTGACCTTACTGATGCTGCTGAAGCAATGTTTATGGAAACTCCTCCAGAAAGCATGGAAGATATTCAGGAGGAGGTTACCAAGTCTCATGTTTTG GGGCTTCAATTTGAGGATGGAAATGACCCCAAAGAAGAAGTTAGAAAGTGGCTTTGTAGGAGTGATGCTAGTTATCAAGACAAGCTATTAGCTTGTGCTG CTTTCATTATTGCTGACCTCAGGATGCAGGTGTTGAAAGAGACGGAATTCACATGTTCTGCTGGCATTGCTCATAATAAGATGCTGGCTAAACTTGCTAG TGCTATGAACAAACCTGCACAACAAACTGTTGTGCCACACTCATCTGTTGCAGGAAACAGCTTGGGGGAAAATTGGGAAGTTCCTTACAAAGTGATCTTG GTGTGAATACTGTTGGTGATCTGCTTCAGTTTTCAGAAGAGAAGCTACAACAACGTTATGGGATCAATACCGGCATTGCAGTACTTGGTTGTGGAATATT GCGAGAGGAATCAGTGGGGAAGAAGTTGAGGGGCGACTACTTCCCAAGAGTCATGGTTCTGGCAAGACATTTCCTGGGCCTCAGACTTTGAAGACAATTG GTTCTGTTCAGCATTGGATAAATGAACTGTGTGAAGAGCTGAGTGAACGCCTTCATTCTGACTTAGAGCAAAACAAACGGATTGCACACACACTCACTCT CCATGCTAGAGCATATAAGACGGGCGTTCCAAATTCAAATAGAAAGTTCCCTTCTAAATCATGTCCTCTAAGATATGGGACTATAAAGATTCAAGAGGAT GCTTTAACTCTATTTCAAGCTGCATTACGTGAATTTATGGGCTTTTATAACAGTAAGACTAATTGGAACGAAAATAACAAGTGGGGGATAACGTCACTTT CTGTTTCTGCAAGTAAGATTGTCCCCATACCATCTGGGACGCATTCTATTGTTAAATACTTTGGTGGGCAAACTCCATCTGGTTCTTCATTGAATCAGCC ACTAGATAATGTCATCGATGAAGCTGTGCCACCGTCATCTTCAGGTACCGAAAATTGTTTGGGATTGATTCTCTGTGAATTACCAGTCAGATATCCTGAA GAAGACACAGCAATGAAGCATTCACAGGATTGTGTGGATCAACAGGATCCATTGTGCAATTTGTCCTCGAAAGTAGATGGCTTGACTGAAGAATCCTCAC TCATCTCACCTACAGGAAGTGAAGACCGGAGAAAACAGAGTGAAGAACATAGAGATTTGCCTGCAAAAAAACCTAGGGTTGTTTTAAATACATCCAGTCT TAAAGCAGTTGAGAAGAGAAAGAGAGAAGGAAAGAAGCTTCAAGGGAATTGTTCAATTACAAAATTCTTCAATAATTATCCAAACTCTCAGTCTTCATTG GAGCAAAAGAATGTTACAAATGCTCAAGGTACTAAAATATCATCATCACTTAGTAATTTTTTATTCCATTTCCTTTCATTATACTTGTGCAATCCCATCT CTGTTATTCCTACATCATAAAAAGTGCAGGATCTCGGTCTGCTAGGGGTAGTTATTTAACTTCCGATGAAGTTGAAGTTGAGATGTCAGCTGCGAGCAGT CATGGCGATATTGTTAAAAACGTTGCTGGATGTAGTGCAGCTAATATTCCTCATGGAAGACAAGCTTGGAGTTATAACATTGATGAGATCGACCCCTCTA TTATTCGGGAATTGCCTCCAGAAATCCAGGAAGAGATACAAACCTGGCTTCAACCTCAAAAGCGGCCTAATGTGGTCAAACGAGGTTCTAGTATTACTAA TTATTTCTTGCCTGACAATAGTAGATGATATGGTTAGTGACTTTGGTCTAATGTACATATTTTATGATGTTAACTTGATTGAGATTGATATGGACTCAGC CTAAGGAACTTAGTTGTGTGTTATGATGTTCCTCGTGGAAGAGTTGTGTAAATATGCATGCTTATCATTATTTCCTACAGAGTTCAGAATAATTTGCTAT TTTCTTCTTTTTGGGATGTTCTAGAAGGATAGTTCTGTGATATCTTCTAATGAACTCTTTTGTCCCAAAAAGATTGTATTAAATAACCATAAATGATGTC TCATTTGTTTTAGCTTGGAAAATTGTCTTTGATTTTGACTTAATACATAGCTTTGT BLAST |
| Tissue | flowers |
| Gene name | LI_gene_60556; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_202372
| Blastp | DNA polymerase eta from Arabidopsis with 78.15% of identity |
|---|---|
| Blastx | DNA polymerase eta from Arabidopsis with 78.15% of identity |
| Eggnog | Poorly processive error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by polIV. Exhibits no 3-5 exonuclease (proofreading) activity. May be involved in translesional synthesis in conjunction with the beta clamp from polIII (By similarity)(COG0389) |
| Kegg | Link to kegg annotations (AT5G44740) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019459921.1) |
| Pfam | impB/mucB/samB family (PF00817.19) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |