| Id Trinity | FTRINITY_DN56555_c0_g1_i7 |
|---|---|
| Name Transcript | Ll_transcript_156477 |
| Sequence | AAAGAATTCAAGAAAGAAAAGAAAGAGAAAAGAAGAAAAGAATACCAAAAGCCAAACGTGTCTTGTACAATAATAAGAATATTGTAGAGGCACGAAACGT GACACGGCACTCTGTTATAAGAATATTGTAGAGGCACGAAACGTGACACGGCACTGAAGAGTTTGAATCTTCAACTCAAAGCCCAAATGAACATGGAACT TGATCACCATGATTCCCCGGAATCCCCACCTAAAATCCACCGCCTCAGCCACTCCGTCGTTAAACGAATCACCGCCGGTGATGTCATCCAAAACCCTCTC TCCGCCGTCAAGGAACTTATCGAGAACAGCCTTGACGCTCACTCCACTAGGATCAACGTCATCATCAATGATGGTGGTTTCAAACTCATCCAAGTCAATG ACAATGGCCATGGAATACGATTCGAGGACCTGGCAATAATGTGTGAGAGGCACACAACATCAAAGTTGTTGAAGTTTGAGGAACTCATGAGAATGAAGAC AATGGGTTTTAGGGGAGTAGCACTTTCCAGCATCTCACATTTGGGTCATGTTACTGTCACGACCATAACCCAAGGGAATGTGCACGGATACAGGGTATCC TATAAAGATGGTGCCATGGAACATGAACCAAAGCCGTGTGCTGCTGTAAAAGGAACACAAATAATGGTTGAGAATTTATTCTGTAACATGGCTACTAGCA AGAAGGCATTGCAAAATTCTAATGGTGATTATACAAAGATTGTAGACTTAGTAAGCAGATTTGCTATTCATCACATAAATGTCAGTTTCTCTTGCAGAAA GTATAAGGCTACTAGACCAGATGTTCATACCAATGTCACATCTTCTAGGCTTGATGTCATCAGATCTGTTTATGGGGTGGCAGTTGCTAGCAATCTGATG GAGATTGAAGCTGCAGACACTAGTCCATCCACTTCAGTGTTTGAGATGCATGGTTTCATGTCAAATGCAACTTATACAGCCAAGAAAATGACTATGATCA TTTTCATTAATGATAGATTGGTTGAGTGGTCTGCATTGAAGAAAGTTATTGAAGTTGTTTATACGAAAAAAGTGCACAAGGCATCTAAACCCTTTGTGAA TATTTCAATCGTCTTACCACCTGGGCAAATTGATGTCAATATGCATGCAACAAAGAAAGAGGTTAGCATTTTAAATCAAGAAGCCATGATTGAACAGATA AAGTCAATGGTTGAATCAAGATTGAGAAGTTCCGATGAGGCACAGTCCTTTGAAGAGCAGGTTTTTCTAAGACATTTTACTATATGGTTTATGAATTTTA CTATATGGTTAGAAATATTTGGTAATTTGAAGTTTTTTATTTTTATATGTTAACTGGATTCATAGATAAGGAAAGCATGTGAAATTTGTTGTGTTTTGCG CTATATTTGTTGTGCTTATGGTTTGAAAACTCAATCTTTAACATATCTTTTTCATCTTTTGACAATGGGATAGATTTTTTGCTTGTTTGTAGTGAAGGCC ATGGCCCATGGCTTATGTGATATTTGGATTGCTGAAGTGATATTTGTTGATACAGGGTACCTATGTGAATCCCCAAAATTAGAGGGAAGTAGTGGGGAGC TTGGGTTATTGTTGAGTCCGAGTCGTTGCCATTTAAGACGCAGGAGGTGGAGAGGATGGCTTCAACAACATTCAAGCATAAAAATAAGAAGATTAGTGTG TAGGAGATGTATATCCCTTAATAGCTCAAAGAGGACTAGAGGAGTGAATGTTAGTGATGTATCGTAGATACCCCATAAGGCTTGTTGGATTGTTAGTTTA GCTGATTGTTGAGAAAGAGGTAGAAAAAGGAGAATTAACATCAGTAGTTCTTGAGGTAGAAAAAGGAGAATTAACATCAGTACTAAGAGAAGTACCATTA GAAGGAGAAGAAGGAGTTGATAGGGACTGAAATGGAAAAGATCCTCTTTAAAAATAACATATTTAGAAATGCAGAGTCTACCCACTTTAGACAACACTTG TACCCTTTGTGCGTGGTTTAGTAACCTAAGTGGATAATATCATCATCACCGGGTCCTCTCAATCTCACTTAACTTCTCTCATTCATAATCCTAGCATCGC TTTTGCTCTAATGGATCTTAGCACTCTTGACTACTTTCTTGGGATAGAGGTTAAGCATTTAAAAAAAGTGTACCATTCTCTCTCGGTCTAGTACATTAAA GATCTTTTTGGTAGAGCAAGTATGCCGGGAGCTAAGTCTATTGACTATCCTGTGGTATCTAATTGAAAGTTGACAAAAACACACTCAAACTATTTTGAAA ATTCTTCTTTATATAGGTTTATAGTTGGTGCTCTTAAATATGCTATTATTACTACACCTGGCATTGCTTATTCAGTTAACAGTTTGCCAATTCTTGTCTA CTCCACTTGAGGAACATTGTGCACCCCCACCCCCCTCCTTTGGTTTGTAGAGGGTTGTATTAGAATGATAGATGATTTTGTATATATAGGATTGAGTCAG CTTGCTTGTAATAGATCTCCTAGATTGCTGTAGAATCTTGACCACATTAATAATCTCTCTTTATCTTCCCATTTCTTCTCTTCCATCTTCTTTTTACAAC TCTCAAATGTAATTACTGGCTGGAATTCCTCGTTTAATCCATCCAAGATATAGTCAACTCTCTCCTCGCTACCATGTCAGCAGTGAATGTTGAGCAGTCT TTTTCGGTCCTCCAGAGCTGCTCCCAGTGAACAGAGGGAACATCACCCATCCAACCTTACCCAAGAAGATCGGCATCAAAATCTCCCGCATGTGCCCACA TGCGCTGCTGCTGTAGACTGCCTTTCCAAAGACTTGCCACACAGTGAAGTGTGTGCTAGTCCCTTCACCTTGCTATTAGTCTAGTATATTTTTTTGCCAC ACCTTGGACCTCTTTGTGCGATCTTTAAGTAATTGTTATGAGTCTGTTAGCCATGTGGCACAACTAATGGCAAGACTCTGTAGGACGAAAATTGTATGGA CCGAAATATTACCTGCACCTATTTTAATTTCTAATTGATTCTTGTCCAAGATGAATGCAAATTTTGCTTTGTTCAATTTTTATTCAAAGTACCTTAATTC CATTTTCTATTCATTTCTTTGTCCCGTGCTTGTAGCAAACTGCTAGGCTATCTTCTCCGTCTCAAATTAATACCAGCATGAAGGCTAACCTCAACTCTAA GGCAATGGGTATGGGAACTTTATGTCTTTTCTTATGCTTACTTCTTGCGCTTTTATGGCTTATCATGTTGTTTTTCATGTATTTTCCAACATTC BLAST |
| Tissue | flowers |
| Gene name | LI_gene_61159; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_156477
| Blastp | DNA mismatch repair protein MLH1 from Arabidopsis with 63.79% of identity |
|---|---|
| Blastx | DNA mismatch repair protein MLH1 from Arabidopsis with 63.79% of identity |
| Eggnog | This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex (By similarity)(COG0323) |
| Kegg | Link to kegg annotations (AT4G09140) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019440187.1) |
| Pfam | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (PF13589.5) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |