| Id Trinity | FTRINITY_DN56647_c1_g1_i14 |
|---|---|
| Name Transcript | Ll_transcript_83525 |
| Sequence | TGCGCATGTGTGCTGCGCCAAGGCACGTCCTGGTGCGCCTGTGTGCTGCGCCAAGGGACGTGCTGTGTGCTGCGCCACGGCACATCCTGGTGCGCATGTG TGCTGCGCCAAGGATGCCCATGCTGAGGCCATGGCGCATGAGTTCCCTGCTAGTGCCAAGGCCAAGGGCCATGGCCTGTCCTGGCCTGTCAGGGACACTG GCCAAGGGCTGTTTGGCACTGATGTGGCCCATGCCATTTTTTAACAGTTTCTGTTATTATTAGTTATAGCCGTTATTTTGGCGCCAAAACTTTCCAAACT TTTTGTATAAATTCTTTGGCTTGTTGATCAAGCAATTGTGAAATAAAGTAGATAAATTCTTTTTCTTCCAAATTGCAATATGGTATCAAGAGCTTAACTC CGCTGCAACATCTTTCAAAACCAAAATCTATCATCTTCTTCCATCCAAATGGCAATGGCAGATGAACAAGGTCAAGAATCTGACCTACACATTATCACCA ACTCATACGATACACAAAGCCCATACTATATGCACCCTGGAGAAAACCCAGGCTCTGTCCTTGTCTCACCACCACTAACTGGAAGCAACTACCATTCTTG GTGCAAATCAATGAGACGAGCACTAGGTTCCAAGAACAAGATCAGATTCATAGATGGCTCACTCACACCAGGAGATCCTACAGAAGTCAATTTTGAGATA TGGCACAGATGCAATGACATGGTAATCAGTTGGATTACAAAGTGCCTATCACCTGAAATCTCTCAAAGTGTGGTATACATAGATAGTGCACAAGAATTGT GGGAAGACTTGAAAGAAAGGTTTTCAAAGGGAGACTACTTTCGGTTTTCAGATCTTCTCAAAGAAATCCACTCAATAAAACAAGGAGACAAGGGAGTTTC AAAATATTTCACTGAATTGAAAACATTATGGGATGATCTTGAGTCACTAAGGGTCATGCCATCTTGCCTATGCCCAATCAGATGCAGATGTGGGATGATT GACAAAATGAGGGAACAACGCGATATAGAGTATACCATCTGTTTCCTCAAAGGACTAAATGATGATTTTGGCACATCAAGAGCACAAATCCTATTAATGG AACCACTGCCAAAAATAAGGAAAGCTTTTGCCTTGCTTGTTCAGCAAGAAAGGCAATTGCTTGGAGATAATGAGGTGAACTCCAATGTTCTGTTTAATGC CATCAACAAAGAGACAACTCAAGCTGATCCAACTCAACAATGGAGATCAAGATCAAGTCTTATTAAAGGAAACAGCAATGCACCAAGAGGGAAAAGCACC AACAGAACTTTCACCAACACAAAGCCTATCAATATCAAGATCTGCTCATTCTGTGGTAGAGAGAGGCACACAGTGGAAACATGCTATTTTAAGCATGGTT TTCCACCAAACATGAACCAGAGTAAGGCAAGACAAATAATTGGCTCAGTCAACAGTGCAACAACAAACAAAGGCAAAGAGCACAATGATGCTGATGATAC TTCTGAGAATGCCACAATGAGTTTTAGTCTTGGAGCCAAGGAGTATGCCCAATTAGCATCACTATTTCAAAACATTGGAATAACAGCTCCTAATCACAGT GTCAACCAACTCAGCATCAAGCCTGGGCAAACCTTTGGAGACAGCAAAGACTCAGAAAATCAAGATCAAGGAACAACAGGTAAAACTTTCTGGATTTTGG ACTCAGGGGCAACTGACCATGTTTGCCCCCAACTCAGTAAATTTGACACCTTTCAAAGCATAAAACCTGTCACAATTAACTTGCCAAATGGAACCACTAC CTTGGCAAAGATCAGTGGCAACATTGTCTTAAATAAGCTTTTACATTTGCATAATGTCTTATATGTGCCCAATTTTGAATATAATCTCATTTCTGTGCAC AAACTCACAAAATCAATGCACTGCAACCTAACCTTTGATGCTATGAAATGTTCTATTCAGGATATGAATACCTTGAGGATGATTGGGCATGCTGAGATTA AAAATAGTCTATATGTTCTAGAGGATTCTGTTGATAATATTTCTGCTAGAAAACACATTGTAAATGCCATGTGCACTTATGACTCTTTTGACTTGTGGCA CTATAGGTTAGGCCATCCATCTCATGATGTATTGAAATCTGTTTGTAAGAACTATGCTGATGTAAAATTTGATGAAAATAAAGTTGCTTGTGAATTTTGC CACTTAGGAAAACAAACCAAACTTCCTTTTCCTAGTAATAAAAACAGAAGTATGTACATCTTTGACATTGTCCACTTGGACATATGGGGGCCCTTGGGAA TTTCTTCCATACATGGTCATAGATACTTTCTTACTGTCATGGATGATCACTCAAGGTATACATGGCTGTTCCTAATGAAATCTAAAGCAGAGGCAAGAGG CCTAATGCAAAACTTTATTACTATGATCAAAACTCAGTTTGGCAAACAAGTTAAACAAGTAAGAACAGACAATGGGACAGAATTCAACATTCCCAAGTAC TTTAGTGAGCATGGCATGATACATCAAACTTCATGTGTTGAAACTCCACAACAGAATTCTGTTGTGGAGAGAAAGCATAGACACATATTGAATGTGACTA GAACTCTTATGTTTCAGTCTAGACTTCCTAGAACCTTTTGGGGGTATGCTGTCCAACATGCCACATACATAATAAATAGACTACCTAGTCACACATTAGA CCACAAGACTCCTTTTGAGCTTCTGCATAATCAAACACCTAACCTGCTAGATATCAAGGTCTTTGGATGTCTATGTTTTGCCTCAACTTTGACACATCTT AGGACCAAGCTTGAGCCTAGGGCAAGAAAGTGTGTTTTTCTTGGCTACAAAAGAGGTACAAAAGGTTATGTTGTCCTTGATATTAACAACAGGGAAATAT TCCTGTCTAGACATGTCATCTTCTATGAGCATATTTTTGCTTATGGAAATTTAGAAGATAAGGATCAAATCACTTCATCTAATCCCACTGTCAGCTCTGA TTTTATGGACAATTGTGATCCTGTTAGCAATAGTCATGGATTAGATGTTCCTAGGTCTTCTAGCACTAGTGTCCCAAGCACTACTACTACCCCTGAGCAG CCTGCAAACCTAGACAACTTTGACCCTAACCATACAGAGTCTGATCAAAATGACCTTAGAAGGTCAAGTAGAATTAGGGGTCCACCAACTTATTTGAAGG ATTTTCATTGCAATTCTTTTAGGGTTGATGAAACCAAGGTGACACACCCCTTATCTGCTGTTCTATCTTATAGTTCCTTACTTCCTGCACACCTCAGTCA CACTTTGGCCATATCAACACATGATGAGCCAAAACATTATAACCAAGCCATCACCTCACAGTATTGGATAGAGGCTATGCAAAATGAACTCAATGCCTTA GAGCTAAATAAGACTTGGACCTTAGTTGACTTACCTAGTGATAAGAGGGCCATAGGTTGTAAGTGGGTGTATAAGATCAAATATAAGTCAGATGGAACTA TAGAAAGATATAAAGCTAGACTTGTAGCAAAGGGGTACAATCAAATAGAAGGCTTAGACTACTTTGATACTTTTGCCCCTGTTGTGAAATTAACAACAGT AAGGCTTCTTCTTGCCATAGCTTCTTCACAAAACTGGTTCATTCATCAATTAGATGTCAATAATGCCTTTTTGCATGGAGATCTTGATGAGGAAGTTTAC ATGACAATTCCTCAAGGGGTTGTCTGTGGTGAAGCAAACAAGGTTTGTAAGCTGCATAAGTCCCTTTATGGTCTTAAGCAGGCAGGAAGACAATGGTTTA CTAAGTTGTCTCAGTACCTTGTTTCACTAGGCTATGTGCAGTCTCATCATGATCATTCCTTGTTTACCAAGAAATCCAAGAATCTGTTTACTTCACTGCT CATATATGTAGATGATTTGTTGTTGGCAGGGAATGACAAAGCTGAAATTGATCATGTAAAGAATTGTCTTCATGATCAATTCAAGATCAAAGATCTTGGT ATACTTAGATACTTCCTAGGATTAGAAGTAGCTAGAACTAGTGCTGGAATTAATTTGTGCCAGAGAAAGTATACCTTGGATATCCTGTCTGATGCAGGTT TTTTGGCTTCAAAACCTGCTCTAACTCCTATGGTAAAAAACTACAAAGCTTTGTCAGGATAATTCCCCTAAATACAGTGATCCTATGTGTTATAGAAGAC TAGTAGGCAGACTCCTTTACTTAACTAACACTAGACCTGATATAGGTTTTGCTGTTCAGCAATTGAGCCAATTCATGGCACAACCTACTGTCATTCACCA TAAAGCCTTAACTAGAGTGTTGAGATATCTAAAGAGCAATCCTGGACAAGGATTGTTCTATCCTGCTTCTTCTTCTTTGCAGATTAAAGCCTTCAGTGAT TCAGATTGGGCAGCATGTGTTGATTCAAGAAAATCAATCAGTGGATATTGTGTTTTTCTTGGTGACTCACTTGTGTCTTGGAGGGCAAAGAAGCAAACAA CAGTGGCCAGATCCTCTTCAGAGGCAGAGTATAGGGCACTTGCTTATACTTCATGTGAAATCCAATGGTTGACTTACTTACTTGTTAATTTTCAGGTTCC TTTCATACAACCTGCTCTTCTCTACTGTGATAGTGAATCAGCCAGGCATATTGCAGCCAATTCTGTGTATCATGAGAGGACAAAGCACATCGAGATTGAT TGCCATGTAGTCAGAGAACGCTTACAAAAGAAGCTTTTCCATCTTATGCCAATTTCCACTGTGGAACAGCCAGCTGATTTGTTAACCAAGGCACTTGATC CTTCACCATTCTCACATCTTATCTCCAAGCTTGGAGTGAACAATATCTACTCTCCAGCTTGTGGGGGGGTATTGAAGAATGTCACTAACTTGAGCTTGAA GGTTCCTCATGGTCTACATGCTGCT BLAST |
| Tissue | flowers |
| Gene name | LI_gene_61909; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_83525
| Blastp | Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 32.9% of identity |
|---|---|
| Blastx | Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 33.22% of identity |
| Eggnog | - |
| Kegg | - |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_017415202.1) |
| Pfam | gag-polypeptide of LTR copia-type (PF14244.5) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |