Id Trinity | FTRINITY_DN56677_c2_g13_i1 |
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Name Transcript | Ll_transcript_83404 |
Sequence | GAAATAACCATCGTCACGTTCGATTTTAGTGGTTGTTCATCTTGTGCAGAGTCTCACAAACCTCGAAAACCCTAAACATGCCGCCATTACCGTCTCTGCA ACTTCGAAGACTCTTGCTTCGATCATTCCGCTCTTCTTCCTTCTCATTCTTCTCTTCTTCTCCAATTCATTCCACTCCTCTACTTCCCAAACTACCTTCT TCCACTCTTTCATCTCCTAATTTTCTCACTTCACCTTCATTCTTCACAACCCTTCATTTCTCTTCCCAAACCTTACCCGATGAATCCGATCCAATTGTGC GATCTCTCTCCTCTGCACTTCTCAATGATCCTGATTCCGATCCTGTCTCTGTCTCTCAGCGCCTCCACCTCAGCTTCTCTCACATTACCCCAACCCCTGA TTTGGTCCTCCAAACCCTAAATCACTCACCTGATGCTGGACGCACCGTTTTAGGGTTCCACCACTGGCTGTTTTCCAATCCTAAATTCATGTATACTGAT GAAACCCTCTCATTCTTCGTTGATTACTTCGGCCGCCGCAAAGATTTCAAGGTAATTCATGAACTTCTCGCTAGCGAAAATGCCCGCTCCGTTGCCGGGC CTAGAACTCTATTCTCTGCGATTGACCGGATTGTCCGAGGGGATCGAGCCAGTCGAGCTGTTCAATTCTTTGAGAAAATGGAAACGGAATACGGTTTGAA GCGTGACCGTGATTCATTGAAGGTGGTGGTTGAGAAGCTAAGTGGAAAGGGGTTTGCGAGTCATGCTGAGAAAATGGTGAAGGATTTGGCGAATAAATTC TTTCCGGATCAAGCAATGTGCGATATGTTGATAAAAGGTTGGTGTGTTGATGGGAAACTAAGAGAAGCTCGTAGGCTCGCAGGTGAGATGTATCGTGGGG GGTTTGAGCTTGGCGTTGATGCTTATAACGCAATGCTTGATTGTGTGTGCAAGCTCTGTCGCGAAAAGGATCCCCTCCGGATTCTATCGGAGGCGGAGAA GGTTCTTGTTGACATGGACTATCATGGGGTTCCAAGGAATGTGGAGACATTCAATGTGTTGATAACGAATTTGTGTAAGATTAGGAAAACGGAGGATGCT TTGAAATTGTTCAATAGGATGGGGGAGTGGGGTTGTTATCCCAATGAAACCACATTTCTTGTGTTGATTAGGAGTTTGTATCAGGCTGCGAGGTTGGAAG AAGGGGATGAAATGATAGATAGGATGAGATCTGCTGGCTTCGGCAAAGTGCTTGATAAGAAGGCTTACTATGAGTTCCTCAAGATTTTGTGTGGCATTGA GAGAATTGATCATGCTTTGAGTGTCTTTGCAAAGATGAAGGCTGACGGTTGTGAACCTGGGGTTAAGACTTATGACTTGTTGATGGGGAAATTGGGTGCC CACAATCGTGTTGATAAGGCTAATGCTCTCTTCAATGAAGCGAAGAATAGAGGAGTGCCTATCACACCCAAAGACTATCCTATTGATCCTAGGTTCTTGA AGAAGGCCAAAGATGCCAAGGGGGAGAAGAAGGTGAAGAAGAGGGAAACTTTGCCTGAGAAAATGGCTAGGAAGAGAAGTCGGCTGAAACAGATTCGGTT GAGTTTCGTGAAGAAGCCTAAGCGAATGATGGGTGGGCGCGGCTGATCTCTCATTTTTTTACTCTTAGTATGCCATTGGTTTATCAATGGTTTTGCAACA TTGAACTTATTGTTTTCTTTATTTTAACATATTCTGAATTAAATTCTTGTTTGGAACGGGTTTCTTGCTTGGGACTACAAGCATTGATTTGATCCTCTTT GTTAGAACTTAGAAGTGCCTCATGCCAACACTTGCTGTTGAGCACATAATAGATGTGGTAGGGGTTTGCACGTGCCCTGTTCTTCTATCCAAGTTTGTCT TTTTCAGGTGGCTCCTTTCACATTTAAGTACATAACCTCATTCATGTCCTCTCAGAATCAGTGTTTGATGGAACTGTTTTACGTGTTTCACTTGCTGAGA AGCTCATAGGATTTTATGGCTGTATTATGTTGGTTAAAGATTCAAATTCGAATTCTGAAATTGAATGCACACAAGGACACTGTAGTGGATGCTCTAACAT ACTTATGTTATAACAAGTAGCTTCTGCCCATTCTAGCTCAAATTTTTAGTTATCAATTTGCACTATCATCACAATGTGGTACGGAGATTACCCGTCCCGA ACGGTGTCCTATTTTCCATCCCAAACCAATGAGAGAGCTACATTTTATAACTTTTTGTTTTTAAATTTTTTCTTTTATCCACATGTAAATATGTGATTG BLAST |
Tissue | flowers |
Gene name | LI_gene_62174; |
Additional information | details; |
FPAB | abscising flower pedicels |
FPNAB | non-abscising flower pedicels |
LF1 | lower flowers stage 1 |
LF2 | lower flowers stage 2 |
LF3 | lower flowers stage 3 |
LF4 | lower flowers stage 4 |
UF1 | upper flowers stage 1 |
UF2 | upper flowers stage 2 |
UF3 | upper flowers stage 3 |
UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_83404
Blastp | Pentatricopeptide repeat-containing protein PNM1, mitochondrial from Arabidopsis with 60.92% of identity |
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Blastx | Pentatricopeptide repeat-containing protein PNM1, mitochondrial from Arabidopsis with 61.06% of identity |
Eggnog | Pentatricopeptide repeat-containing protein(ENOG410Z7Z7) |
Kegg | Link to kegg annotations (AT5G60960) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019464245.1) |
Pfam | PPR repeat (PF01535.19) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |