| Id Trinity | FTRINITY_DN56682_c3_g1_i7 |
|---|---|
| Name Transcript | Ll_transcript_84769 |
| Sequence | ATTTGTACAAAAAAAAATCTCTAATCTCAAATAAAAAAGATTTATTGTTGACATGACAGGGAAAGAACTTGAAAACCCCAACCAAAAAATCTTAGTTTTG GAGTGTCAAACTGAGGTTAAAGAGCAAGAATAGGCAGCGGTTTTTTATTCTTCGCACCCTCTGTCTCTTTGAACCTTCGTTTAAAGGAATCAAAGACAGT ATCCAAAAAGACATCCTTGGATCAAAAGAAGCATGAAGGAAGAAGAGGATTTCTGAAATCGTTGAACATAGGAATCGGCTTACCCACATTATTGGGTGGA AAATCATATGCTGATGAACAAGGAAATTCTTCCTCCAAAATGTCTTACTCTAGGTTTCTTGTGTATTTGAACAAGGATAGAGTTAGAAAAGTGGATCTGT TTGACAATGGAACCATAGCGGTTGTAGAGGCTGTTTCTCTTGATAATAGGGTGCAACGATTGCGAGTTCAACTTCCTGGACTTAGCCGAGAGCTCCTTGA GAAATTCAGGGAAAAGAATGTTGACTTTGCAGCTCATAATGCCCAAGAAGAGTCAGGTTCTCTGTTATTCAACCAGATTGGGAATCTGGCTTTCCCTCTA ATCTTGATTGGAGGGTTGTTCCTTCTCTCAAGACGATCACCTGGTGGGATGGGAGGACCTGGCAGGCCTGGCTCTCCTCTTGCCTTTGGTCAGTCCAAAG CCAAGTTTCAAATGGTGCCAAGTACTGGAGTGACGTTTGATGATGTCGCTGGTGTGGAGGAAGCCAAGCAGGATTTTATGGAGGTGGTGGAGTTTCTGAA GAAGCCCGAGAGATTCACTGCTGTCGGCGCTCGCATACCCAAAGGAGTTCTTCTTGTTGGTCCTCCAGGAACTGGGAAGACGCTATTAGCGAAGGCTATT GCTGGTGAAGCAGGTGTCCCATTTTTCTCAATCTCAGGTTCTGAGTTTGTTGAGATGTTTGTTGGTGTCGGTGCTTCTCGAGTCCGTGATTTATTCAAGA AGGCCAAAGAGAATTCTCCTTGCATTGTTTTTGTTGATGAAATTGATGCTGTTGGAAGGCAAAGAGGTACTGGAATAGGTGGAGGGAACGATGAAAGAGA ACAGACACTTAACCAACTTTTGACAGAAATGGACGGGTTTGAGGGTAATACTGGTGTCATTGTGATTGCAGCAACTAACAGAGCTGACATTCTTGACTCT GCTTTATTGAGACCGGGACGGTTTGATAGACAAGTAACAGTTGACGTTCCAGATATACGGGGAAGGACTGAAATCCTAAAGGTTCATGGTAGCAATAAAA AGTTTGATGCCGATGTCTCTTTGGAGGTAATTGCAATGAGAACACCTGGTTTTAGTGGAGCGGATCTGGCAAACCTCTTGAATGAAGCTGCTATATTAGC TGGTCGGCGTGGAAAGACAGCAATTTCATCCAAAGAGATTGATGATTCTATTGATAGGATTGTGGCTGGAATGGAAGGAATGGTGATGACCGATGGGAAG AGCAAAAGTTTAGTGGCATATCATGAAGTTGGGCATGCCATTTGTGGAACTCTGACTCCTGGTCACGATGCTGTACAAAAGGTCACGTTAGTCCCACGTG GGCAAGCTCGTGGTCTCACTTGGTTCATTCCTTCTGACGACCCAACTCTGATCTCTAAACAACAACTCTTTGCAAGAATTGTTGGTGGACTAGGTGGTAG AGCTGCAGAGGAAATTATTTTCGGAGAGCCTGAGGTCACAACTGGAGCCGCTGGTGATTTGCAGCAAATAACCGGTTTGGCCAAACAGATGGTAACGACA TTTGGAATGTCTGATATTGGTCCTTGGTCACTTATGGATACCTCAGCTCAAAGTGGAGATGTTTTCATGAGAATGATGGCCAGAAATTCGATGTCAGAAA AGCTTGCTAAAGACATAGATGCTGCAATTAAGAGGCTCTCCGACGAAGCATATGAAATTGCGTTGCGCCATATAAAGAACAACCGTGAGGCAATTGATAA GATTGTGGAAGTCCTACTGGAGAAGGAGACCATGAGCGGAGATGAATTTCGCACGCTCCTGTCGGAGTTTGCCGAAATTCCAGCTGAAAATCAGGTCCCT CCTTCAACTCCTTCACCAGTTGCTGTTTGAATAGGCTATGTGCTACTGCAATGTAGTGTAGCTATCTTCATACTATTTTTTTCTGAAA BLAST |
| Tissue | flowers |
| Gene name | LI_gene_62246; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_84769
| Blastp | ATP-dependent zinc metalloprotease FTSH 2, chloroplastic from Arabidopsis with 88.27% of identity |
|---|---|
| Blastx | ATP-dependent zinc metalloprotease FTSH 2, chloroplastic from Oryza sativa with 87.01% of identity |
| Eggnog | Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins (By similarity)(COG0465) |
| Kegg | Link to kegg annotations (AT2G30950) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019418270.1) |
| Pfam | TIP49 C-terminus (PF06068.12) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |