Ll_transcript_188047

• Id Trinity: FTRINITY_DN56720_c5_g1_i2
• Name Transcript: Ll_transcript_188047
• Sequence: CACCGGCTCTCAAATTAGGGCTCCGCAAACGCCCAACATAACTATCATCAGTTGCAAAATCACTCCCATCTCAACCTTCACTAATCGATTTTGATGGCGT GCAATGGCGACGGTTGCCAATCCACTTGTTACAAAGACGAACAACCATGTTCTAAACCAATCGAATCACCAAACCTTATTAGTAAAATTTGCATTAAGTG CAAACTCAACGACGCCGTTTCTGGCTATGGCGGCGTTGATGATGGACGCTTCTGCGCCGATTGCTTTCGAAGCAACTTGTTTGGGAAGTTCAGGCTCGCT GTTACTTCGAATGCAATGATTACTCCCACTGATAAGGTTCTTGTTGCATTCTCCGGTGGCCCTTCTTCAAGGGTAGCTTTGCAGTTTGTGCATGACATGC AAGAGAGGGCGCAGAAGAACTTTGATGCGAGTAGAGATAGGTCATTGCCGGTGTTTGGTGTTGGAGTGGTGTTTATTGATGAGAGTGCCATTTTGTCGAT TCCTTCTGGTGAAATGGAGGAGGCAGTTGAGGTTATTAGTTCGGTCGTGTCAAGCTTAGCCCCGCCAACGAAAGAGTTGCATATTGTTCCTGTTGAAAAT GTTTACTCGTCAGATTCTAGTGATGGAAAGGAGAAGCTTATTAAACTAGTGGGTTCGGTTAGTGATCCAACAGGAAGGGAGGATATGTTGCTTTATTTGC GGATGTTGGCCCTGCAAAAGGTTGCTTCTGAGTTTGGGTATAACAGACTTATTGTAGGATCATGCGTTTCAAGGATTGCTTCCCATGTGATTTCTGCCAC TGTGAAGGGTCAAGGATATTCATTACCTGCAGATATACAATATGTTGATGCTAGATGGGAAATTCCCGTTGTGCTTCCTCTGCGTGATTGTTTTGCCCAA GAGATTAACATGTTTTGCCACCTTGACGGTCTAAAGACTTTTCGGTTTTCTACAGTTCCTTGCTCTAGTATCAATAGCTTGGTCTCATCTTTCGTAGCGT TATTGCAGGAAGAAAATCCATCTCGAGAGAGCACCATTGTAAGAACAGCTGGGAAACTTATTCCCTTCCAATTCAATAGGATTCCCGAGATCGTTGATGG TAAGGTTCCATTGGCAACTCGAAGACGCCAAAAGAGATATAATCTCAAACCCAATGATTCTGTTTCCTCAGAATCTTTCTGTCCTCTCTGCAATAGCCCA CTTGACAAGTCTGAAATTGTTGATGCAAGCAATGTTGATAGCAGTAGAAGCAGTGACATTTTTTACAGTGCCTGCTGCTCAAGTTGTCATTTTCAGATAC TTCCAAGCGATTCCATATCCATGGAGCAATTTTATAAGGATTTACCTCAACCAGTGCTTTCCCGAGCAAAGCAAACCAACAATGGCAATTTGAGTCTGCT CAGGGAACAAATCCAAGATTGCTTGCTTTCAGATTGTGAAGATTAATCTTAAATTTAGTTGCCAACATTTAGACTCTTTGAAGAGGGCACAAATTCTGGC TTTGGTGAACTTTTAGCCTCTGGCAAAACTAAGAGCATTACAGTTCACCACTGAGATTCACTACTGGCATTCCTTCAGGACATGGTTGTTGTTGATGATT ATCTGGGATAATATTTCAGAGTATATTTGAGTATTAATAATGTGATAGATGACATAATTGAGTTTTTTCATATTCTTGATTCATAAGAATCAGTTTTCAA GCTTTTGATTAATTTAAGTGATTATTTGCATCCATGTACCTAGTGGAAATGACATTGTACTCTAGATTACATATGTTATGGCAAATGTTGGATCATGAAA GAGGGTTGTCTTAACAAAGTTCCTTTAAGGAATATAAAATAAAGATTCAACATTGGAAGCTAAAA
• Tissue: flowers
• Gene name: LI_gene_62581;
• Additional information: details;

Expression of Ll_transcript_188047

FPKM

• FPAB: 5.6
• FPNAB: 9.3
• LF1: 7.4
• LF2: 7.2
• LF3: 6.3
• LF4: 7.7
• UF1: 7.7
• UF2: 6.1
• UF3: 7.6
• UF4: 9

Labels

• FPAB: abscising flower pedicels
• FPNAB   : non-abscising flower pedicels
• LF1: lower flowers stage 1
• LF2: lower flowers stage 2
• LF3: lower flowers stage 3
• LF4: lower flowers stage 4
• UF1: upper flowers stage 1
• UF2: upper flowers stage 2
• UF3: upper flowers stage 3
• UF4: upper flowers stage 4

Annotations of Ll_transcript_188047

• Blastp: Cytoplasmic tRNA 2-thiolation protein 2 from Arabidopsis with 58.55% of identity
• Blastx: Cytoplasmic tRNA 2-thiolation protein 2 from Arabidopsis with 58.55% of identity
• Eggnog: Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). May act by forming a heterodimer with NCS6 that ligates sulfur from thiocarboxylated URM1 onto the uridine of tRNAs at wobble position. Prior mcm(5) tRNA modification by the elongator complex is required for 2-thiolation. May also be involved in protein urmylation (By similarity)(ENOG410YGU3)
• Kegg: Link to kegg annotations (AT4G35910)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019444040.1)
• Pfam: Cytoplasmic tRNA 2-thiolation protein 2 (PF10288.8)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;