| Id Trinity | FTRINITY_DN56723_c1_g1_i11 |
|---|---|
| Name Transcript | Ll_transcript_189043 |
| Sequence | AAAGAAGCTGATGCATGTTTTGAGATTAAAAACTCCCTTGTGCAGAAAAAGTAAGTATAAATTATTGTGAGCTATATTGGACACGGTTGATGCTGTAAGC CCATGTTGTTTATGTTTCCAACCTTGTCCAGCTACAACATACCATTGGTGGCTGATATTCATTTTGCCCCTGCTATCGCTTTGCGAGTTGCTGAATGCTT TGACAAGATTCGTGTCAACCCCGGAAATTTTGCTGATAGACGGGCTCAATTTGAAAAACTTGAGTACACTGAGGAAGATTATCAGAAAGAACTTGAGCAT ATAGAACAGGTTTTCACTCCATTGGTTGAGAAATGTAAGAAATATGGGAGAGCAATTCGCATTGGAACAAACCATGGAAGTCTCTCTGATCGTATAATGA GCTACTATGGGGACTCTCCTAGGGGGATGGTTGAATCTGCTTTTGAATTTGCAAGAATATGCCGAAAATTGGACTTCCACAATTTTGTTTTTTCCATGAA AGCGAGTAATCCAGTTGTGATGGTTCAAGCATACCGTTTACTTCTATCTGAAATGTATGTCCAAGGCTGGGATTATCCATTACACTTAGGAGTTACTGAA GCTGGAGAAGGTGAGGATGGACGGATGAAATCCGCAATTGGCATCGGAGCTCTTCTCCAGGATGGGTTGGGGGACACAATTAGAGTTTCTCTCACAGAAC CACCAGAGGAGGAGATAGATCCTTGCAGAAGGTTGGCTAACCTCGGTATGGGAGCATCTAAACTGGAGAAAGGAGTGGCACCTTTTGAAGAAAAACATAG ACGCTACTTTGATTTCCAGCGACGATCTGGTCAATTGCCTGTGCAAAAAGAGGGTGAGGAGGTGGACTACAGAGGCGCCCTGCACCGCGATGGTTCTGTT CTCATGTCAGTCTCATTGGATCAATTAAAGAAGCCAGAGCTCCTCTATAAGTCACTTGCTGCCAAACTCATTGTTGGCATGCCATTCAAGGATCTGGCAA CAGTGGATTCGATTTTATTGCGAGAACTCCCTCCAGTCGATGACAACAATGCTGTAAGAATCTTTACTTGGCAACATGAGTTTAATCAACTTTAAATAGA AAAATTTACTAGCTCTGCCTCATTATCCTTGAAAGTATTTACTGCATTGTCAGTTGATAAATCAGTTAGCATGAATTTTATTTTCCCTTTTCCATTTTGG GTATTGTGATCAGCGGCTAGCTCTCAAAAGACTGATAGATATAAGCATGGGGATCATAACTCCTTTATCAGAGCAACTAGCAAAGCCATTACCCAATGCT ATGGTTCTTGTAAACCTTAAGGAACTGTCTACTGGTGCTCACAAATTTTTGCCACAAGGCACGCGCTTGGTTGTGTCAGTACGTGGTGATGAGACTTCTG AAGAACTTGAAATTCTTAAAGATGTTGATGCTACCATGATTTTCCATGACTTACCTTATGGGGAGGACAAAATTAGCAGAGTACATGCAGCAAGGAGGCT ATTTGAATATTTAGCAAACAATTCTCTGAACTTCCCTGTCATTCATCAC BLAST |
| Tissue | flowers |
| Gene name | LI_gene_62607; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_189043
| Blastp | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic from Arabidopsis with 89.29% of identity |
|---|---|
| Blastx | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic from Oryza sativa with 83.19% of identity |
| Eggnog | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity(COG0821) |
| Kegg | Link to kegg annotations (AT5G60600) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019448725.1) |
| Pfam | GcpE protein (PF04551.13) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |