Ll_transcript_189683

• Id Trinity: FTRINITY_DN56735_c0_g2_i8
• Name Transcript: Ll_transcript_189683
• Sequence: TTACTGTCATATGCATGATTAATGCCTTACAGTAAAGAATAAGATCCTCTCCATTAATGTAGAGACAAATGATTATTTTTATATAATGAAAAGATAAAAA TATCATTTCATGTTGTATTTTATGTGTTATTTTATGCCACTTATCTCTCAAGAGGATCTTACACTATAATAACACTACTCATAAAACTGCTCCAACCTAC CCATATTCCTGTGCCTTCTTCTGCTTCTTCCTTTTCATTCTTTCTCTCTTTCTTCTCAGCTTTGACTCAACAACATGCTTGTGGCATTGCTCTTGCTGCT GGTATTGAGCAATGCTGTTAGAATTGATGCAGAGGGTGGACAATGTGTTTCAAATCAAACACTAGACCCAAGACCACACAGTGTCTCAATTTTGGAGTTT GGTGCAGTTGGAGATGGCAAAACACTCAACACTCTTGCATTCCAGAATGCCATTTTCTATCTCAAGTCATTTGCTGACAAGGGTGGTGCTCAACTATATG TACCACCAGGAAATTGGCTCACTGGTAGTTTCAATCTTACAAGCCATCTCACCCTCTTTTTGGAAAAAGGTGCTTTCATTATTGGATCTCAGGATCCATC TCATTGGGATGTTGTTGCACCATTACCTTCTTATGGCCGAGGTCTTGAGGTTCCTGGTGGAAGATATCAGAGTTTGATAAGTGGATACATGTTACATGAT GTGGTCATAACAGGTAATAATGGAACCATCGATGGCATCGGATCGGTTTGGTGGGACTTGTTTGGCTCACATTCCTTGAACTATAGCCGTCCTCATCTAG TTGAAATTGTAGCATCTAGATTTGTGGTAGTTTCAAATCTTACATTCTTGAATGCCCCTGCATATAGCATCCACCCAGTTTATTGCAGCCATGTACATAT TAAAAATGTTTCAATCTCTGCTCCTCCAGAATCCCCTTATACTGTTGGTATAGTACCAGATTCTTCAGATAGTGTTTGTATTGAAGATTGTGTTGTAACC ATGGGATATGATGCAATTGCCTTAAAAAGTGGCTGGGATGAGTATGGTATTGCTTATGGCAAACCCACTGAGAATGTACACATCAGAAAGGTGAATCTGA AAGCATTTTCCGGCTCTAGTTTAGCATTTGGCAGCGAAATGTCTGGAGGTATTTCAAATGTTCTTGTGGAGGATGTTCATATTTTCAACTCGAATAGCGG CATCGAGTTCAGAACCACCAAAGGAAGAGGTGGTTATATGAAAGATATTTTTATGTCAGACATACAAATGGAGAATGTCTATACAGCAATTGCAGCCACA GGCCATTATGGCTCTCACCCCGATGACAAATTTGATCGAAATGCACTACCACTTTTAGACCACATTACCGTGAAGGATGTTACTGGTACAAACATCACCA ATGCTGGAAGTTTTGTTGGAATAGAAGAATCTCCTTTTACAAATATATGCCTTTCCAATATAACCTTGTCTACCAATTCAGTTTCTACTATTACTTGGGA ATGTTCAAATGTCTCGGGATTTTCGGACTCCGTGTTTCCAAAACCATGTCCAGACCTTGAGAGCCCTTCAAATTCTTCTTCATCATGTTTTCCCTACTTG CTGAGTATCACTGAAAGAAAAACTGCAGTGCTGTGATTATCATTTCTCAATAGAAGATTCAATATTCTTGAGTACATTGCTTGAAAAAACGAGCAGCGAA TTGCAAGTGAAGATTAGGTCTCATTCTTTTCAATAAGACACTTGTCCGGATTCTTTTTTACCACTTAGATTTCCATTCTTCTATTTTGCTATCAGCACAA TATTTGTACAGGTTTATTTCTTCATTCATGTGTAAGGAAATTTTGGTTGTGTCACCACAGGAGAACAAAAAAAAAAGATAGCTCTTTGCAATAGTCCATT GTGACTTCACTGTAAACTGTGTAGTTGATTTGGTTAATACTTCAATTGATGGAAATTTCAACTTTATGGCCATTAAAATATCAACCTTTTATTACTTAAT
• Tissue: flowers
• Gene name: LI_gene_62727;
• Additional information: details;

Expression of Ll_transcript_189683

FPKM

• FPAB: 0.8
• FPNAB: 1.1
• LF1: 1.7
• LF2: 0.8
• LF3: 0.6
• LF4: 0.7
• UF1: 1.3
• UF2: 0.9
• UF3: 0.8
• UF4: 0.4

Labels

• FPAB: abscising flower pedicels
• FPNAB   : non-abscising flower pedicels
• LF1: lower flowers stage 1
• LF2: lower flowers stage 2
• LF3: lower flowers stage 3
• LF4: lower flowers stage 4
• UF1: upper flowers stage 1
• UF2: upper flowers stage 2
• UF3: upper flowers stage 3
• UF4: upper flowers stage 4

Annotations of Ll_transcript_189683

• Blastp: Probable polygalacturonase from Vitis with 46.98% of identity
• Blastx: Probable polygalacturonase from Vitis with 47.7% of identity
• Eggnog: Glycoside hydrolase family 28(COG5434)
• Kegg: -
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019419433.1)
• Pfam: Pectate lyase superfamily protein (PF12708.6)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;