Ll_transcript_187784

• Id Trinity: FTRINITY_DN56742_c2_g4_i2
• Name Transcript: Ll_transcript_187784
• Sequence: AGTATTTACATTTGGCATCAGAGCTTCGCAAGGGGCCTGATAGTGAGAAAAAGAGAAGAGTGTGTGTGAGAGTTTACAAATGGCAGACAAGTTTGTACAA CCAGCCATTCCAAAGTTTGATGGCCATTATAATCACTGGTCAATGATGATGGAAAACTTTCTGAGAAGCAAGGAACTGTGGAATCTCATAGAGGAAGGCA TTCCAGTGATTGGAGCTACATCGTCAAGTGAAGCACAGAGGAAAGCTGTGGAGGAAGCCAAGCTAAAAGATTTAAAGGTTAAGAATTTTCTGTTCCAGGC AATTGATAGAGAAATTCTGGAAACAATTCTTGACAAAGGGACATCAAAGGCCATTTGGATGTCAATGAAGCAGAAGTATCAAGGCTCTACAAAGGTGAAA AGAGCACAACTTCAAGCTTTGAGGAGAGAGTTTGAATTGCTCACCATGAAAGAAGGAGAAAGAATAGACAGCTTCTTGGGAAGAACACTTGGTGTGGTGA ATAAAATGAAATCCAATGGTGAAAACATGGCGCAAGACATGGTGGTCAGCAAGGTCCTTAGATCATTGACTCCTAAATACAACTATGTTGTCTGTTCGAT TGAAGAGTCAAATGATCTAAGCACCTTAACCATTGATGAACTTCATGGGAGTCTGCTGGTTCATGAACAGAGAATGCAGGAATATCAAGAGGAGGAACAG GTGCTAAAAGTCACTCATGATGACAAAACTAGAAGAGGAGGAAGGACTCTTTTTAGAGATGGAAGAGGCAGAGGTCGTGGAAGAAGATCTCTAAACAAAG CAATTGTAGAATGCTATAAGTGTCATAAGCTTGGACACCTTCAATATGAGTGTCCAGAATGGGAGAAAAAGGCAAACTATGTTGAGGAAGAAGAAGCAGA AGAGGAACTCTTGTTGATGTCACACATGGATCAGCAACCAACTAGACAAGAGGAGGCTTGGTTCTTGGACTCAGGATGCAGTAATCACATGACAGGCAAC AAAGGTTGGTTCACCAACTTAGAAGAAGGTTTGTCTCAAACTGTGAAATTAGGGAATAATATGACAATGAAAGTGGTAGCAAAAGGAAGTGTGAGAATGC AAGTCAATGGTGTCACTCAAGTTATTACTGATGTTTACTTTGTTCCTGAACTCAAGAATAACTTACTCAGTTTAGGACAACTTCAAGAAAAAGGATTGAC AATTCTGATTCAGAATGGAGTATGCAAAATATTTCATTCTAAGAGGGGCTTGATCATGCAAACAAGTATGAGTGGAAATAGAATGTTCTATATATCAGCC ACTGTAGCACCAAAAGAAACCATGTGCCTACAAATGGAGCTAAAGAAGGAGAAGGAAGTGCACCTATGGCACTGTCGATTTGGGCACCTTAATTATAAGG GACTCAATACACTGTCACAGAAACAAATGGTGGCTGATTTACCAAACCTAAAGTTCTCTAAGAAGACTTGCATTACTTGCTTGACTGGAAAACAACACAG AAGATCAATCCAAAAGAAAAGCATGTGGAGAGCCTCAAGGAAGCTACAACTTGTGCATGCTGATATATGTGGTCCTATCCAACCTTCTTCAAACAGTAAT AAGAGGTATATCTTAAGCTTCATAGATGATTTCACACGAAAAACTTGGATTTATCTGTTACATGAGAAATCAGAAGCATTTCAACATTTCAAAAATTACA AAATGAGTGTTGAAAAGGAAGTTGATGGACACATTGCCTGCTTGAGAACAGATAGAGGTGGTGAATTCACCTCATATGAGTTTGCTGAATTTTGCAAAAC TCAAGGAGTTAAAAGGCAATTAACAGCAGCCTATACCCCCCAGCAAAATGGGGTTGCTGAGAGAAAAAACAGGACAATCATGAATGGTGTGAGGGCTGTG CTAAAGGAAAGACAAGTTCCAAAGATATTTTGGGCAGAAGCTGCAAAATGGTGTGTTCATGTACAAAATCGAAGTCCAACTTCAGCAATAAAAAACACAA CTCCTGAAGAAGCATGGAGCAATGTGAAGCCTGCAGTAGGATATTTTCGAGTTTTTGGAAGTGTGGCTCATGTTCATGTCCCTGATCAAAGAAGAACCAA ACTTGAAGATAAGAGCAAGATGTGCATTTTCTTAGGAATCAGTGATGAATCAAAAGCTTACAAGCTATTTGATCCTATTTCCAAGAAAATTATTGTAAGC AGAGATGTGGTGTTTGAAGAAGACAGAAGCTGGGATTGGGGGAAAACTGATGAAGAAAGAAAAGCAGATCTCTTAATTTGTGAAGGAGAAGAAGAGAATC TTGATGAAGAAGAAACTGATGAGGAGGAAGAAGTACATGAGCAGGAAGAGAATGAGGAGGGTGGAAGCAGTTCTAATGAAATCACAGCATCATCAAGAGA AGAAAATGGCACTGATCAAGAAAGTTTGGATCAAGGGAGGGCTAAAAGAACTACAAAAGAACCAGCATGGATGTCAGACTATGTAACAGGGACTGATCTA GCTGAAGAAGAACTTATGATGTTGATGACTGCAAGTGAAAGTGATCCACTCTCTTTTCAAGAAGCATACAAGAGCTCAAAATGGCAGGAGGCAATGCAGA ATGAGATAAAAGCTATAGAGAAGAATGGCACATGGGAGCTAACAGACTTACCAAAAGGAGTCAAACCAATTGGAGTCAAATGGATTTACAAAACCAAACT TAATGAAAGTGGAGAAGTAGAGAGATACAAAGCAAGATTGGTGGCAAAAGGATATGCACAACGATATGGGATAGATTACAATGAAGTGTTTGCACCTGTG GCAAGACTAGATACAGTACGTCTCATTCTTGCACTAGCAGCTCAACATGAATGGGAAATATTTCAACTTGATGTGAAGAGTGCATTCCTTCATGGGGAAC TTAAAGAAGAAATTTTCACTGACCAACCAGAAGGGTTCATTAAGAAAGGGGAAGAGGACAAAGTCTACAAGTTGAAGAAGGCATTGTATGGCCTTAAGCA GGCACCAAGGGCTTGGTACAGCAAGATAGAAGCTTACTTCATGCGTGAAGGATTTGAAAAATGCTCTAGTGAACACACTCTATTCACAAAGAAAGAAGGA GGTAACATACTCATTGTTAGTCTCTATGTAGATGATCTTATATTTACAGGAGGTAATAGAAGTATGTGTGATAAGTTTAAAAGTTCAATGATGAGAGAGT TTGATATGTCTGATTTGGGAAGGATGAAACACTTTCTGGGAATTGAGGTAATACAGAATAAAGATGGAATATTCATTTGTCAAAGAAGATATGCAAGAGA AGTCCTTGAAAGATTTAACATGGGAAGTTGCAATGCTGTGAAAAATCCAATTGTTCCTGGAACAGAATTATCAAAAGATGAAGAAGGAGATGGAGTAGAT ATCACTATGTTCAAACAAGCAGTTGGGAGCCTTATGTATCTCACAGCAACTCGACCAGATCTGATCTATGGAGTGAGCTTGATCAGTAGATTCATGGCAA ATCCTAAGTCTTCTCATTGGCTGGCAACAAAAAGGATTTTCAGGTATATCAAAGGGACTACTGATTTTGGTATACTCTACAAAAAGAACAGCAGAAATGC AGGCCTTGTATGCTATACAGATAGCAATTATGCTGGAGATTTGGATGATCGTAAAAGCACTTCAGGCTTTGCTTTCATTATGGGATCAGGAGCAATTTCA TGGGCTTCTAAAAAACAACCAGTGGTGAGCCTATCAACCACAGAGGCCGAATACATTGCTGCTTCACTTTGTGCTTGTCAATGTGTTTGGCTTAGACGAA TTTTAGAACAACTTGGAGCAGAAGAAAAGGAAAGTACAGAAATCTATTGTGACAACAATTCTACAATTCAATTATCCAAAAATCCTGTTTTTCATGGAAG AAGTAAACATATTGGAGTCAGATTTCATTTTCTCAGGGACCTGGTGAATGATGGAATCATAAAGCTGAGCTTCTGTAATTCTGAAGAACAAGTTGCAGAT TTAATGACAAAGCCTCTTAAGGTGGATCAATTTGTGCATTTTCGAGAGATGCTTGGAGTAGTTGATGCAACTGATATATAAGCTTAATGAAGATGCATTA GCTTAAGGGAGGGAATGATAGTTATTTTTAGTTTAGTTTTCAATAAGTCCTAGTCTTATGGGAGTCCTATTCTTTAGGAAGTAGTTGCTGCCATGCAACA TATTTTTCTGTTTTGATGCTTGTTTGTTGCACGTACACCTTGCTATTAAAGCTGGTGATTATCTTCAATAAATTCATTCTATTCATTCCTCTTACAAAA
• Tissue: flowers
• Gene name: LI_gene_62805;
• Additional information: details;

Expression of Ll_transcript_187784

FPKM

• FPAB: 0
• FPNAB: 0
• LF1: 3.7
• LF2: 1.1
• LF3: 1.6
• LF4: 0.2
• UF1: 1.8
• UF2: 1.9
• UF3: 0.7
• UF4: 0.3

Labels

• FPAB: abscising flower pedicels
• FPNAB   : non-abscising flower pedicels
• LF1: lower flowers stage 1
• LF2: lower flowers stage 2
• LF3: lower flowers stage 3
• LF4: lower flowers stage 4
• UF1: upper flowers stage 1
• UF2: upper flowers stage 2
• UF3: upper flowers stage 3
• UF4: upper flowers stage 4

Annotations of Ll_transcript_187784

• Blastp: Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 33.31% of identity
• Blastx: Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 32.92% of identity
• Eggnog: -
• Kegg: -
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_020987654.1)
• Pfam: gag-polypeptide of LTR copia-type (PF14223.5)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;