| Id Trinity | FTRINITY_DN56742_c2_g4_i3 |
|---|---|
| Name Transcript | Ll_transcript_187786 |
| Sequence | TGGACACCTTCAATATGAGTGTCTAGAATGGGAGAAAAAGGCAAACTATGTTGAGGAAGAAGAAGCAGAAGAGGAACTCTTGTTGATGTCACACATGGAT CAGCAACCAACTAGACAAGAGGAGGCTTGGTTCTTGGACTCAGGATGCAGTAATCACATGACAGGCAACAAAGGTTGGTTCACCAACTTAGAAGAAGGTT TGTCTCAAACTGTGAAATTAGGGAATAATATGACAATGAAAGTGGTAGCAAAAGGAAGTGTGAGAATGCAAGTCAATGGTGTCACTCAAGTTATTACTGA TGTTTACTTTGTTCCTGAACTCAAGAATAACTTACTCAGTTTAGGACAACTTCAAGAAAAAGGATTGACAATTCTGATTCAGAATGGAGTATGCAAAATA TTTCATTCTAAGAGGGGCTTGATCATGCAAACAAGTATGAGTGGAAATAGAATGTTCTATATATCAGCCACTGTAGCACCAAAAGAAACCATGTGCCTAC AAATGGAGCTAAAGAAGGAGAAGGAAGTGCACCTATGGCACTGTCGATTTGGGCACCTTAATTATAAGGGACTCAATACACTGTCACAGAAACAAATGGT GGCTGATTTACCAAACCTAAAGTTCTCTAAGAAGACTTGCATTACTTGCTTGACTGGAAAACAACACAGAAGATCAATCCAAAAGAAAAGCATGTGGAGA GCCTCAAGGAAGCTACAACTTGTGCATGCTGATATATGTGGTCCTATCCAACCTTCTTCAAACAGTAATAAGAGGTATATCTTAAGCTTCATAGATGATT TCACACGAAAAACTTGGATTTATCTGTTACATGAGAAATCAGAAGCATTTCAACATTTCAAAAATTACAAAATGAGTGTTGAAAAGGAAGTTGATGGACA CATTGCCTGCTTGAGAACAGATAGAGGTGGTGAATTCACCTCATATGAGTTTGCTGAATTTTGCAAAACTCAAGGAGTTAAAAGGCAATTAACAGCAGCC TATACCCCCCAGCAAAATGGGGTTGCTGAGAGAAAAAAACAGGACAATCATGAATGGTGTGAGGGCTGTGCTAAAGGAAAGACAAGTTCCAAAGATATTT TGGGCAGAAGCTGCAAAATGGTGTGTTCATGTACAAAATCGAAGTCCAACTTCAGCAATAAAAAACACAACTCCTGAAGAAGCATGGAGCAATGTGAAGC CTGCAGTAGGATATTTTCGAGTTTTTGGAAGTGTGGCTCATGTTCATGTCCCTGATCAAAGAAGAACCAAACTTGAAGATAAGAGCAAGATGTGCATTTT CTTAGGAATCAGTGATGAATCAAAAGCTTACAAGCTATTTGATCCTATTTCCAAGAAAATTATTGTAAGCAGAGATGTGGTGTTTGAAGAAGACAGAAGC TGGGATTGGGGGAAAACTGATGAAGAAAGAAAAGCAGATCTCTTAATTTGTGAAGGAGAAGAAGAGAATCTTGATGAAGAAGAAACTGATGAGGAGGAAG AAGTACATGAGCAGGAAGAGAATGAGGAGGGTGGAAGCAGTTCTAATGAAATCACAGCATCATCAAGAGAAGAAAATGGCACTGATCAAGAAAGTTTGGA TCAAGGGAGGGCTAAAAGAACTACAAAAGAACCAGCATGGATGTCAGACTATGTAACAGGGACTGATCTAGCTGAAGAAGAACTTATGATGTTGATGACT GCAAGTGAAAGTGATCCACTCTCTTTTCAAGAAGCATACAAGAGCTCAAAATGGCAGGAGGCAATGCAGAATGAGATAAAAGCTATAGAGAAGAATGGCA CATGGGAGCTAACAGACTTACCAAAAGGAGTCAAACCAATTGGAGTCAAATGGATTTACAAAACCAAACTTAATGAAAGTGGAGAAGTAGAGAGATACAA AGCAAGATTGGTGGCAAAAGGATATGCACAACGATATGGGATAGATTACAATGAAGTGTTTGCACCTGTGGCAAGACTAGATACAGTACGTCTCATTCTT GCACTAGCAGCTCAACATGAATGGGAAATATTTCAACTTGATGTGAAGAGTGCATTCCTTCATGGGGAACTTAAAGAAGAAATTTTCACTGACCAACCAG AAGGGTTCATTAAGAAAGGGGAAGAGGACAAAGTCTACAAGTTGAAGAAGGCATTGTATGGCCTTAAGCAGGCACCAAGGGCTTGGTACAGCAAGATAGA AGCTTACTTCATGCGTGAAGGATTTGAAAAATGCTCTAGTGAACACACTCTATTCACAAAGAAAGAAGGAGGTAACATACTCATTGTTAGTCTCTATGTA GATGATCTTATATTTACAGGAGGTAATAGAAGTATGTGTGATAAGTTTAAAAGTTCAATGATGAGAGAGTTTGATATGTCTGATTTGGGAAGGATGAAAC ACTTTCTGGGAATTGAGGTAATACAGAATAAAGATGGAATATTCATTTGTCAAAGAAGATATGCAAGAGAAGTCCTTGAAAGATTTAACATGGGAAGTTG CAATGCTGTGAAAAATCCAATTGTTCCTGGAACAGAATTATCAAAAGATGAAGAAGGAGATGGAGTAGATATCACTATGTTCAAACAAGCAGTTGGGAGC CTTATGTATCTCACAGCAACTCGACCAGATCTGATCTATGGAGTGAGCTTGATCAGTAGATTCATGGCAAATCCTAAGTCTTCTCATTGGCTGGCAACAA AAAGGATTTTCAGGTATATCAAAGGGACTACTGATTTTGGTATACTCTACAAAAAGAACAGCAGAAATGCAGGCCTTGTATGCTATACAGATAGCAATTA TGCTGGAGATTTGGATGATCGTAAAAGCACTTCAGGCTTTGCTTTCATTATGGGATCAGGAGCAATTTCATGGGCTTCTAAAAAACAACCAGTGGTGAGC CTATCAACCACAGAGGCCGAATACATTGCTGCTTCACTTTGTGCTTGTCAATGTGTTTGGCTTAGACGAATTTTAGAACAACTTGGAGCAGAAGAAAAGG AAAGTACAGAAATCTATTGTGACAACAATTCTACAATTCAATTATCCAAAAATCCTGTTTTTCATGGAAGAAGTAAACATATTGGAGTCAGATTTCATTT TCTCAGGGACCTGGTGAATGATGGAATCATAAAGCTGAGCTTCTGTAATTCTGAAGAACAAGTTGCAGATTTAATGACAAAGCCTCTTAAGGTGGATCAA TTTGTGCATTTTCGAGAGATGCTTGGAGTAGTTGATGCAACTGATATATAAGCTTAATGAAGATGCATTAGCTTAAGGGAGGGAATGATAGTTATTTTTA GTTTAGTTTTCAATAAGTCCTAGTCTTATGGGAGTCCTATTCTTTAGGAAGTAGTTGCTGCCATGCAACATATTTTTCTGTTTTGATGCTTGTTTGTTGC ACGTACACCTTGCTATTAAAGCTGGTGATTATCTTCAATAAATTCATTCTATTCATTCCTCTTACAAAA BLAST |
| Tissue | flowers |
| Gene name | LI_gene_62805; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_187786
| Blastp | Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 38.06% of identity |
|---|---|
| Blastx | Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 37.48% of identity |
| Eggnog | - |
| Kegg | - |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_020987654.1) |
| Pfam | Reverse transcriptase (RNA-dependent DNA polymerase) (PF07727.13) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |