| Id Trinity | FTRINITY_DN56748_c0_g1_i16 |
|---|---|
| Name Transcript | Ll_transcript_190098 |
| Sequence | ATAAGGTCCCATGGGCACGAGGAGCCTGGAAAGGATAGCCATTCATTTTCGCTAATCTATGCTAATGGTGAACGCTCTCTCGATCTGGTAATGTTTGTCA TTTTTTGCAATACATATAGCTGCAATTGTTTCCCTATATCAGTAGTTTGAACTATTTATTTATCTTAACTATAGATATGCAAGGATAAAGCACAGGTTGC TTTGTGGCTTGTTGGCTTGAAAGCAGTGATTTCTCGGTGCCAGCATCCTAAACCTTTTAGTAGTTTAAGAAGCTGCAAAGGGGTTCAGAGTTGTGTTAGT AGTCCAGCTGGAATCTTCCGAAGAAAGAAAAATCTTGGCCTTCTGGATGAATCTTCTCCATTTACACAGGTACATAGCGTATGCGCAAGTCCTACTTTGT CACTTTCAGAAAGGTGCTTTTCTGATGGATTTTCGTATGCATCTGATAACCTTTATTCCAGAACTCATGCCGTAAAAGATCATTCAGTCCCGAGTTCACC TTACATTGATCCAGATATTCCTTGTAAGGTTGAATCACCATGTCTTCACAAGGAGTACAAGAATTTGTCTTATAGGCCTCTGATGCCTCCACCCTCCCCC CGGATACGAAATAACAATGTATTAAAGGATGTGATGGTATGGGGAGGAGGGATTGGAGGTCCATTAGGGATTGGGAATGAAAAGTTTGTCAACCAACATG GGATTTATTCTTTAGTTCCGAAGTTACTAGAATCCACTATGATGTTAGATGTACAAAATATAGCTCTAGGAGGAAAACATGCTGTCTTGGTTACAAAACA AGGGGAAGTGTTCTGCTGGGGTCAAGGGAAGTGGGGAAGGTTGGGGCAAAAAAATGATATTGACATTAGCTCTCCGAAAATAGTTGATTCTCTTAACGGT ATCCATATTAAAAATGTTGCATGTGGTGAATACCATACGTGTGCTTTGACTGATTCCGGTGAAGTATATACATGGGGAAATGATGCTTGTAGTGTAGATT TGGCTGATGAATGGAGAAATAGAAGTCAGTGGATACCACAAAAACTTTCCGGTCCTTTATATGACATTAGTATTTCAAGTGTTGCTTGTGGGGAATGGCA TACTGCAATTGTCTCCATCTGTGGGCGGTTATTTACATATGGAGAAGGTACATTTGGCGTTCTTGGCCACGGCAATTGTAGGAGTTTTTCTCAGCCAAAA GAAGTCGAATCTTTGAGTGGTCTCAGAGTGAGGTCTGTTGCTTGTGGATCGTGGCATACGGCCGCTATTGTAGAAGTCATTGCTGACCATTTTAGGTATA GTACTGCGAGTGGTAAGCTTTTTACATGGGGTGATGGAGATGAAGGGAGGCTCGGCCATGCTGATAATAGAAGCAAACTTATACCAACATGTGTTTCACA GCTTGTTGACTATGATTTTGTTCAAGTGTCTTGTGGAAGAATGTTGACCGTTGCGCTTACTACTATGGGCAAAGTTTTTGCAATGGGAAGTGCAAAATTT GGACAATTGGGAAATCCACGTGCTAGGGACAAAGCAGTTATGGTTGAAGGACTTCTGAAAAAAGAGTTTGTTAAAGTGATATCATGTGGTTCATATCATG TTGCTGTTCTGACTTCTGCCGGGAGTGTCTATACATGGGGCAAGGGTGAAAATGGTCAACTCGGGCTAGGAAATACTGAAGACAGATTCACCCCTTCTTT TGTTGAAACACTAAGAGATAGGCAGGTGGATGCAATAACTTGTGGCCCAAGCTTCACAGCCGCAATCTGTTTACACAAACCTATTTCTATCAGTGACCAA TCAGCATGTAGTAGTTGTAGGTTGCCATTTGGGTTCACAAGGAAGAAGCATAACTGTTATAACTGTGGTTTTCTATTCTGCCATGCATGTAGTAGTAAAA AAGCTATCAATGCATCACTAGCCCCAAGTAAGTGCAAGGCTTTTCGGGTTTGTGATCAGTGCTTCGATAAACCTCAAGGAAGTACATATTCTGGAATGGC GTCAAAGTCCGGAAGTTACAACACTCAACAATTACTGAAGCATCAAAACAAAATTTCCGATCTGACTGATGATAGGGGAGAAACAACAGTAGCACAGAGT GCCATGTCTCTTGGTCAATCATGTTACAGGAAAAGCATGCCGAGTGGACGGAAGGACTGGAAAAACCAACAAGAAAGCCAGCAGCATTTAGAAGATAATT CTTCTGTGTTGAGTGGAGTATCGCGATGGGGGCAAGTTCCATGCCCTGATTCGTTTAACATCAATTGTACAGAACGATCAGTTATGCGTGTTTCTTCATC CAAAAATAAATTAGCCACTGTTTCACCAATAGAAATAGAATCTGCAGCATGCAACTTCACTACTGCTGAGACAGATACAACAAAGTCAGATAAGATGCTC ATAGAAGAAGTTCAAAGACTGGGAGCTGAGGCTAGAAGACTTGAAGAGCAGATTGAGCTCAAAAACCAAAAATTACAAGAGTGTCAACAAAAACTCGAGG AGAGTTGGCTTGTGGCTAAGGAGGAAGCTGCTAAGAGCAAGGCAGCAAAAGAGGTCATAAAAGCTTTGGCATTAAGGCTTCATACATTATCAGGAAAAGA TAATGGTGGACAAGAAGAAAAGGTTATACATGAATGTCTGCCTAATTTGGCTCACATACAAACAGATATCAAGAGTCCAAAAGTTAGCAACATGGACAGT CTATCAAATTCACCTATAGTATTTTCCGATACACTAAAATCCAAAATTGGGAGAAGTATGCTCCTTAAAAATGATAAATTATCGGAGAACTTGAACTTCA ATAGAGCAGAACCACAAGAAGACAGCAACAGCTTGAAGGCTGAATGGGTAGAACAGTATGAGCCTGGTGTTTACATCACATTAACAACCTTATCATGTGG AAAAAAGGGCCTTAAGCGAGTGAGATTTAGCCGGAAACGATTCTCGGAGAAGGAAGCTGAAAGATGGTGGGAAGGGAATCAAGCCACAGTCTACCATAAG TATGATATTGAAGGATATACAGACACAAGACAAAGTTGAAAGGCTAATTATTTACTTGTCACTCATTTTTAGTAGTTTTGTTTTCTCCAGTTATTGGTAT AGGTGGTGATTTTGGCTTCATGTTTAAGATTAGAAGTTTAATGCAAGAAATAGTATGCATTCATGTATCTAAGTGTTCCTTTGCTCATGAATATATTGGG GCATTCCATCTTGTGTATAGTCACTAATAACAGAGTATATCTTAATTTTATTTTAAAGGTTGTTCTAATTTAAACATGTCAAATATATTTCCATAATGTA AAGTTTGTTGTAATTCAA BLAST |
| Tissue | flowers |
| Gene name | LI_gene_62855; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_190098
| Blastp | PH, RCC1 and FYVE domains-containing protein 1 from Arabidopsis with 40% of identity |
|---|---|
| Blastx | PH, RCC1 and FYVE domains-containing protein 1 from Arabidopsis with 55.79% of identity |
| Eggnog | regulator of chromosome condensation(COG5184) |
| Kegg | Link to kegg annotations (AT1G76950) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019419884.1) |
| Pfam | Regulator of chromosome condensation (RCC1) repeat (PF00415.17) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |