| Id Trinity | FTRINITY_DN56760_c3_g1_i1 |
|---|---|
| Name Transcript | Ll_transcript_189342 |
| Sequence | CAAAGACCGCGACTTTTAAAAATTGAAAAAAACAAAAAAAAAACAGTGAAATATAAATTCCGCTTACGAATCACAGTGCACAGTGTGTGTTTGTGAAAAT GAGTGATGGCATTGTTTCTTCGTATCTTCAAAGAATGGCCACAGAACTCAACTGTCCCATTTGTTGGAGTTTGCTTGATTCCGCAGTTTCACTTACCTGT AATCATGTATTCTGCAAATCGTGTATTCTGAAGTCGATGAAGTCGGTTTCTGATTGTCCTGTTTGTAAAGTACCTTACACTCGTAGAGAGGTTCGCCCTG CTCCTCAAATGGACAACATGGTTAACATATACAAGAGCATGGAGAGTGCTTCAGGGATTAGCACTCCGGTCACACAGAACGTACCTATTACTAAACTAAC AGATGGAGAAAAGCTACCCGAAGGTGATACTGATTGTGAAATGAAGGATGCTGGCGAAATTCATAAGAATCACGCACAGAAGAAGAATCTCATCAGAAAA AAGGAGTCAAAGAAAAAAGTGTCTAGCACAAAAGGTGTTGAAATTTCAAAACCATATTTTCCAGCAAAGAAAAGGATTCAAGTGCCACAGGACCCTCTTT CAGAAACACCATTAATGGATTATAAGTTTGGAGACACTCTAAAAGGTGAAGTTAATAAAGAGGGAACAAAAGGGGGTTTGATCTTGGCAAATGAAAAGCC TTTCCAAAATGAAAAGCATGATCATGTTCCTTCACCTTTCTTTTGGTTAAGAGAAGAGGAAGATGGTGAAAGGATAAGTCAAGAATCTAATGGGGATCAA CTCATTGATTGTGCAACACCAACTCCTCCTTCATTCAGTGATCTCAAGGACTCTGATGATGAAAGCCCTTTAAAAAAAGCTCTATCAGATGAGGCGCAAA ATAAAGCCTCTGTTAATTTATTTGATAGTGAGATGTTTGAGTGGACACAAAGGCCTTGCTCTCCTGAATTATTTTCAAGTCCTGTCAAAATGCAGGTTGA GGATACTTGTGAGATTGATGAAAATCAAGAGGATTTTGTTGCATCGCCACAAGAGCTGGAAAAAAATTGGTCAGCCGATGCTGACAACTCAAAATTTGTG AATTCCAAAGAAGGAAATGGATTCAATAACAAGTTACCACAAACTGTGCCTTCTCAAATTATAAGTTCTGATGATCAAAATGGGATAAAAGAGTCTGCAA AGAGAGGTAGGAAGGCTAGGGGAAAAACAAGGCAAGGGAAGACTGGGGAACAAAGAAGTCTGGGAAAAGCAAGACAAGGGACGACTGAGGAACAGAGAGA TCCAGTTAATGGAATGGATGCTGGTTCCAATATATCATCAAAAGTCAATCTGGAGAAAACATTGAACCATAAACATGATTGTTCTAATTTGGGGAATACT AATAGAACGGCAAAGAGTGTTTCATTTAGTACCAGTACAAATCAAACTGCCTGTACAGTCTTGAATATATTAGTTCCAAGTGGTGAAGTGGAGATGGCAA AGAATTCACCATGTAAAGAGGAAATTGAGAAGAATGGTTCTCATGAGATCAGTGAGAAAAGCAAGAGGAAAAGATCTGGAAAACGAAAGTCGAATTATGT GCAGAATCTACCTGAAGAATTATCTCCAGTGCAAAACAAAACCAATGAGTTTTCTGATTCTTTATCATCAGTTTTGACTCCTGAGATGGATGATAATGGA AAGGCCTCTAGTAACAGGCAAAATAAAAGCAACTCTACTAGCAATTTTATGTCTTGCAGTAGAGAATTGAGGAGTGCCAAAAAGTTGAAACCTTCCTCTG ATGGTATCATTGAGACTAAAAATGTTACAGAAATCCAACCTAATGCAAGTTGTCAACGAAGTCCTCATGCTAAGGCTTTGAATGATACATCAAAAGAGAT GCAATGTCCTTTGATGAATCAACCAGTTTTACAGAAATGTGAGAATCGTGTCAAAAAGTATCAGTGTGTTTTCTGTTTCTCATCAGAAGAAACAGAGGAT TCTGGAACAATGGTACATTACTATGATGGGAAGCCTGTAACTGCAGATTATGGAGGTGGATCAAAAGTCACACATTCTCACAGGAATTGCACGGAATGGG CCCCCAATGTATATTTTGTAGATGATAATGCAATAAATCTTGAAGCTGAAATAAGCAGAAGTCGGAGAATTAAATGTTGTTTTTGTGGACTTAAGGGGGC TGCACTTGGTTGTTATGAGAAGAGTTGTCGGAAGAGTTTTCATGTTCCTTGTGCCAAGTTAACTTCTCTGTGTCGATGGGATATGGAAAATTTTGTCATG TTATGCCCTCTGCATGTTTCTTCCAAGTTGCCCAGTGAAAGGTCAGGATCCCAAGAAAGAAGTAACAAAAGCACCACTAGAGAGAGGAAAACCCTTGCTC ACAAGCATGACAATACAGGCCAAAGTCAGACTGCTCATGGATCATACAATAAAATAGTACTTTGTTGTTCTGCTCTATCAGTGCAGGAGCGGGGTGTTGT TTCTGAATTTGAAAGAGCATCCAGGGTTACAGTTTTAAAAAAATGGGATTCAAGTGTCACCCATGTAATAGCGTCAGCAGATGAAAATGGTGCATGCAAA AGGACCCTCAAAGTATTGTTGGGTATTCTGGAGGGAAAGTGGGTTGTAAATATTGAGTGGATCAAAGCTTGCTTGAAGGAAATGGGACATGTTGATGAGG AGCGTTATGAAATTAATGTGGACATCCATGGAATCAGGGGTGGTCCTCGTCTTGGACGACTAAGAGTATTGAACAAGCAACCAAAACTATTTTACGGCTA CAACTTCTATTTTATGGGAGATTTTGAACAGTCATACAAGGGATATCTACAAGATCTCGTGATTGCTGCTGAAGGGACAATTCTGCATAGAAAACCTGTG TCCGTTACCCAAAAAGCAATATCACCTGATATGCATCCAAACCAAACCCTCATCATTTACAGCCTTGAGTTTCCTGCTAATTGCAGTCCTTTGAGAAGGG ATACAATTCTAAAGCAAAGGCGATGTGATTCAGAGGCCCTGGCAAGTTCTACAGGTTCAAAGGTTGCAAGCAATACATGGATTCTGAATTCTATTGCAGC CTGCAAGCTCCAAAGCCTTGCTCTATAAAATGTACCCATTGAGGTTATTTACTGTTACATGGTCCCAAACTCTGGTTTTCCCTTTTTTATCTTTGTTTAT CATGTTTTTGATAAACTTTTATCTTTGTTTATGAGACATGATAAAATATAACAATTTGAATATCTTAAACGAATTTAAGTTGTTTACTGCAATAGATATA TTTAACAATGCAAAAGAATTTAAGTCATTCCAGTGCGTCCTGTGTATCAAGTATATCTCCACATGAGTGAGAAGTGTTTGAGCTATGATATATTATAGGC AAAATGTCAATAATTTTTTTTTTTTTAATACAAAACTGTAACCCTGGATGCAAAAGAGTTGGTGCAATGGGGAACATTTAT BLAST |
| Tissue | flowers |
| Gene name | LI_gene_62933; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_189342
| Blastp | Protein BREAST CANCER SUSCEPTIBILITY 1 homolog from Arabidopsis with 40.18% of identity |
|---|---|
| Blastx | Protein BREAST CANCER SUSCEPTIBILITY 1 homolog from Arabidopsis with 53.47% of identity |
| Eggnog | E3 ubiquitin-protein ligase that specifically mediates the formation of 'Lys-6'-linked polyubiquitin chains and plays a central role in DNA repair by facilitating cellular responses to DNA damage. It is unclear whether it also mediates the formation of other types of polyubiquitin chains. The E3 ubiquitin-protein ligase activity is required for its tumor suppressor function. The BRCA1-BARD1 heterodimer coordinates a diverse range of cellular pathways such as DNA damage repair, ubiquitination and transcriptional regulation to maintain genomic stability. Regulates centrosomal microtubule nucleation. Required for normal cell cycle progression from G2 to mitosis. Required for appropriate cell cycle arrests after ionizing irradiation in both the S-phase and the G2 phase of the cell cycle. Involved in transcriptional regulation of P21 in response to DNA damage. Required for FANCD2 targeting to sites of DNA damage. May function as a transcriptional regulator. Inhibits lipid synthesis by binding to inactive phosphorylated ACACA and preventing its dephosphorylation. Contributes to homologous recombination repair (HRR) via its direct interaction with PALB2, fine-tunes recombinational repair partly through its modulatory role in the PALB2-dependent loading of BRCA2-RAD51 repair machinery at DNA breaks. Component of the BRCA1-RBBP8 complex which regulates CHEK1 activation and controls cell cycle G2 M checkpoints on DNA damage via BRCA1-mediated ubiquitination of RBBP8 (By similarity)(ENOG4111WR7) |
| Kegg | Link to kegg annotations (AT4G21070) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019439680.1) |
| Pfam | Zinc finger, C3HC4 type (RING finger) (PF13920.5) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |