| Id Trinity | FTRINITY_DN56798_c0_g1_i8 |
|---|---|
| Name Transcript | Ll_transcript_189164 |
| Sequence | CCCATAGAAATTTCCCTCCGAGCAAGAAGTGATTCTGAACAGAGAACATAAGTGTATTGTAAAACGCACCGTTTAGTTATCTAACTCATCATTTTGCTCT TTGGAGAAAATCTGAATCACTCAGAGAGAGAGAGAGAGAGAGATGGAACGAAATCTCAACGATCCTACCGTTTCGTCGATTTCCTCTAATGCAAGATCTT CTTCTTCAACGCTTCAACCTAACTATAGTAGCCGATTAGTTCAGGAAACGTTGGAACACTTGGCATCCATTGATCTAATTGACTTGTGCAAAGAAGCGAA AGTTGAGCGATGTCGGGCAACTAGAGATTTGAGAAGCTGTGGTCGCTATGTCCACCATTTGTTGAATTCATGTGGTCATGCCTCATTATGTGAAGAATGT AGCCAGCGGTGCGATAACTGCCCAATTTGTAGAATCCCAATTCCAAAGACTGGTGCTAGACTGCGTCTCCGACTTTTTTATGAGTGCATAGAAGCTGGTC TTATTTCCAGAAGGTGTGATGAAAGATTTCAAGAAATAGAAGACGGGGAGAAACGACTTACTGCTGATGTTCAATGTCTTTATTCTTTGTTTGATGTTGC ACTCGAGAATAACTTGGTTTCTTTAATTTGCCACTACGTTACAGACGTATGTATGGATGAAACTGCTGTTTCCAGTGATCCGGTCTTAGCATTTTTGTTG GATGAAGTGGTTGTAAAGGATTGGTGCAAGAGGACATTCAAAAATGTCTTAACTGAACTACAGGGAATTTGTATCCTCAAAACTTCTATGATGTTTCTAT TTAAAGAATTAAATTTCGTTACAATTATATCTTTTATCAGGTTCATCAATATGTGTGCTCCCTAACAATGTTTACCAGATAATCTTGACGTTGTAGGAAT GAAGGGGAGATTGAGTTTACTTATGAAATTTTCATTATATTTGAAGGGAATAACAAATGTGTTAGACATTTTGGAGTCATCATTTAAGATTACCCTATCA TCGCAACTTCATGATTTGCACCATCTCCATGAGTGCATAATAAAGGCGAAACAGCACCTGGAGATTATTATTTGGTGTACTAGACATCAGTTTTTGGAGG ATGTGAAATCTCGTTTTACTGATAGTTCATCATGGGCTTCGGTTGTCCGTAAACGTAAATCAGAAGCAGTTAGACGTGCTTGGCCTGATGCAATAAATCA ATCCGTGGAGTCAACAGGACACAATGGATCTCTATTTATTGAAGATGCTTTGAATAATCTTGATTTGGAGGAAAGCTTAGCACAGGAAGTTGGAGAGGGA TTTGAGGTTTCAGCCTTGCAGATGGATGGAGCACCATTTTTGAGGTCCAAAACTGACCAGGTGCTGGGTTTCTATCCCTTCAAAAATCTCCGTACTGCTG CTGACCTACTATTTTTACATGGAAGTTCTGATATGGTGATTGCTAAACAAGCAATTTTTCTGTATTATTTGTATGATCGCCACTGGACAATTCCTGATGA AGAATGGAGACACATAGTAGATGACTTTTCAGCCACATTTAATATTAGCAGACACTCATTACTTGAGTCTTTAACATTTTACCTTTTGGATGATCATACA GAAGAGGCTTTACAGGAAGCTTGTCGCCTTCTTCCTGATATTTCTGGACCAGCATCACATCCCAAAATTGCTGAAGTACTGTTAGAAAGGGGTAGCCCTG ATACAGCTCTTATGGTTTTAAGGTGGACTGGGCGTGATAGTGGACCACACATGATTTCACTCAGAGATGCTGTAACTGCAGTGCGGGTGAGGGTTGAGTG TGGGCTTCTGACTGAAGCATTTATGCATCAGAGAATTCTCTGGACCAGAGTGAAGGAAAAAAAATTCAATAAAGGCGCACTTGGGGATACTTCTGACAAA CTAAAAGGCCAATGTAGTAATTGGGTGGAGTGGGTGGAGGCCTTGGTAGCTGAGATTTGTTTTCTCTGTATTAGGAGGAACTTGGTTGATCGAATGCTAG AACTGCCATGGAATTCTGACGAAGAGAAATATATACACAAATGTCTTTTGGATTATGCCATTGAAAACCCCCATGGGACTACAGGAAGTCTTCTTGTTGT GTTTTACATTCAGCGCTACAGATACTCTCAAGCATACCAAGTCCATATTAGACTTGAAAATATAGAGCAAGACTACATTTCAAAAGGTTCTATAAGTGAA GAATTTCTACCAAGATTGGAAACTGCTATTCGGTGGAGGGCCAATTTGGTTAATAGATGCTTGGAGTTGTTGCCAGAAACTGAGCAGCACAAATTGAGGA GCGGAAACTTGACCGAGGACACTGTTACTTCTCATGAAGAAGTTGAAGTCCCTGCTAAATTTGATGTTCCTCCAATTCAGGATTCCAGATCCACCAGTTT ATTGATTCCCTCGTCTGCTAACTCTTCCTCTATGCGGCATAATGATCATACAACTGGTTTGCTGAGTTCGTCGACTTTAGGAACTTCAACCAAATTAGGC ATACCTTTCCCTACTACTGGCCCTGAGCTCGGTAATTTCGGTTCCCCATCTTATCGCCATGAGGGGTTACTTATCAGTAATGAGAGTGTGGCAAATAACA GAGGTAAAACTGGAAACGTTCTTAGATATGATAACACTCCAACTCCAAGGAATCGTAGGATCCGTTTCAGGAATGGTTCACCTTTGAAGGGAGTTAACAG AACATCACCAAGCAGTTCCCAGGAAAATAAGGTGGAGAAAATCCCGCCAGGAGTTGAACATAATTTGCTTTTTGGTAATTATCAAACTACCCCCCATGGG AGGGGGGCTAAAGCTAAGCATGATACTAGATCTGGGCGCAGCTATTCGAAAGAGTTTGCAAATGACCTACCAAATATGTCTAGCTGGAATGTCAAAGCAC ATAAAGATGATAGAATTTGGAATGTAGAGTCTACTGGTGATCCAATGGAGGTTTCTCAGAGCTATGTGGAAAAGAAATTAGATATGGGAGAAAATATCAA TGGTGGACCTAGATGGAGATCTGATGAAACAAGTGATGAGGATGAGGAGCAGGGCCTGGAAAAAGCCATGGATATAGCTCACTATGCAACTCCAACTAGG ACAACTAGAAGAAGCAGATTTGCCATGAGATGAAAACACAAACCTTTTTAATTCACTAAAGCTTTGTTTGTGAGTTGGTTTGTGAAGGAAGGGAAATCCC TGAGAGTCATGAAATATACTTGTGAGATTGTTTTGAAGCTTTCATTTTCTCTTCATTCCTTTATGAAACCCAATCCACAAACAAAACCTAAAGAATTCTG GAAAGTTTCTGGATGAGTAGAAAGTTAAGCAAATTTGCTATGAGGATAAGAGCTCTGCCGCTTTGGGAATTCTAGTTTTCAAGTTTTTACTTTATGCATA TACAGTGGTTTTAGTTGTGCAGCTAATATTCAGTAAGGGAAATGATAATTTTAGAGGTTCATTTCCGAACCCTTTTCCTTCAATCATTGTAAGAGTTATA ATTCTAGCCTTGTAGATCAGTTCTTTAAGGGTTAGTTTAGGAGATGGATTTTGGAGGGGAATGGTTAGTTTAGGAGATGGATTTTGGAGGGGAATGGTTA GTTTAGGAGATGGATTTT BLAST |
| Tissue | flowers |
| Gene name | LI_gene_63245; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_189164
| Blastp | E3 ubiquitin-protein ligase HOS1 from Arabidopsis with 45.6% of identity |
|---|---|
| Blastx | E3 ubiquitin-protein ligase HOS1 from Arabidopsis with 48.54% of identity |
| Eggnog | e3 ubiquitin-protein ligase(ENOG4110YTD) |
| Kegg | Link to kegg annotations (AT2G39810) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019423958.1) |
| Pfam | Nuclear pore complex assembly (PF13934.5) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |