| Id Trinity | FTRINITY_DN56868_c1_g1_i10 |
|---|---|
| Name Transcript | Ll_transcript_10419 |
| Sequence | CAATAATGATTGAAAATGAATGGTGGATGATGTTGGTGTGAGCATGTTTATAGTATAACAAATGAAGTTACAGTAATAAATCCTGATGAAAAAAGCAGGG TCATGTTTTTACCGTGTGAGCATGTCCTTCGTTAACCTCAGGGACATCATTACTTAACCATTGTTTTTGGGTGAACCTATGTCTTTTTTTCTGATTCTAG GTTCAGTAAATGATGGACCATGATGAATTTTAATTGCACTATTAAATTTATGAAATTTAATGTGTGATGTTTTATGATGATTCTTTGAACTTGTTTTATG TTAGTTTGTTAATTAGTATGATGCTGGGAAAACAGAATGAGTTATAAAACCTGATTAAAAAAGCAGGGGTTTGTTGCCTTTGTGAACCGGCCTCTTGTAA CATTCAGGGATATCATATAATTACCAATGTTATTGGGTGAACCTATGTTCTTTTTTGTGTAACTGAAGGTTCAGTAAACAATGGTACATGTTAATTCAAT GATTGTTATTTTGTTGTTATGTTATTTTTAATGCAATTATGTATAATTTCAAGAGTGTGTAGCTGTGATTTGATTCCACAATCTATTAAAAAACAATATT ATTTTTACTAAATACATTTTATTTTAGTTACTATTGAAGTGCCATAGTTTCTGTGAATTGCCTTACTAATCAAAATTATTTATGCACATGATTAAACAAT TTAAAATAGGGAAATGAGATAGAGAGAACTTTCTCATCTTTAAAATAATGGAGTAAAGCAACCTGATGATAAAAGCAGGGGTCTGTTGCCTAATGTGAGC AGGCCTCTCGTAACCTTCAGGGATATAATAACCATTGTTCTTGGGTGAACCTCTTTTCTTTATTCGTGACTGAAGGTTCAGTAAATGATGGAACATGCTT TTCCAGCGCATTTATGAAATATGAATCAATCATGATTAACTTGGGTTTATTGCTAGTGTTTTTCTCTTCTGTTAATGATCGAATGTTACAATTATTTGTT TTATTTTGTTCAAATTTCGTTATTAGTTTTCTGTATGAAGATCATATATTTCAAATTGCCTTTACAGAACACTAGGGAGACAGCGTTTTCCATCAGGAAG CTGCCATTGGTGAAGGCTAAAAGGTACTTGGAGGATGTTCTTGCCCACAAACAGGCAATTCCATTCCGTAGATTCTGTCGTGGTGTTGGGAGAACAGCCC AGGCAAAGAATAGACATTCTAATGGACAAGGACGCTGGCCCGTTAAATCAGCTAAATTCATTCTTGATTTGCTCAAGAATGCTGAGAGTAATGCTGAAGT GAAAGGGTTGGATATCGATGCACTTTACATTTCTCACATCCAGGTCAATCAAGCACAGAGGCAACGGCGTCGTACCTACCGTGCCCATGGAAGAATTAAT CCTTACATGTCATCTCCATGCCACATCGAGCTAACACTATCTGAAAAGGAAGAACCTGTTAAGAAAGAGGTAAATGTTTGATCGTCAGTTTTAATTTTTA AATTTCTTCATAATCTAATCTCTATTATCTGTTTTTCTTGTAGCCTGAGTCTCAGTTGGCACCAAGCAAGAAGAAATCCCAAGCTCTTCGAAGCGGTGCT TCATCTTAAATTGTTATTTTTACCAAATTATTAAGGGCTCTATATACCCTAGAATTTGTTGAGAGTTTTGTTGACTGTTTTGTTTTTCTTTCGTTGTTTG GTATGAGCTTTTTCCTAGAAGAGACCTGAACACCATGTTTTCTTGTGTACTGTTTCAACTTAATTTTGAGTTCATGGAAATACATTATGAAGCTAGTCTA TTTGTTGTTTAAAATGCTTTTGATAATTTTCGTTGTGATAGTGTTAAGTGTCTCTCTGATTGAATCATGATGGCTATCTGAATGTAATTCGGCTGCACTG ATAGAATACCAAAAAAGCTTTGACGAGTTTGATCTAGTGCCCAGATTTTTGAACCTAAACTAAGTTGTAAATTTGGTGAAACTCGGCTCTATGTAGGACT AATTAAGACTTGAGTAAATTGGGTTAGCGGGTAGGATAGAGTTTTAGTGGGTTTGATCTATGTGACTATTGCACCCCAGAATGCTGAGAGTAATGCTGAA BLAST |
| Tissue | flowers |
| Gene name | LI_gene_63839; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_10419
| Blastp | 60S ribosomal protein L17 from Zea with 84.51% of identity |
|---|---|
| Blastx | 60S ribosomal protein L17-2 from Arabidopsis with 84.62% of identity |
| Eggnog | The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome (By similarity)(COG0091) |
| Kegg | Link to kegg annotations (541667) |
| CantataDB | Link to cantataDB annotations (CNT0000618) |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019460299.1) |
| Pfam | Ribosomal protein L22p/L17e (PF00237.18) |
| Rfam | snoR74 (RF01231) |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |