| Id Trinity | FTRINITY_DN56878_c0_g1_i4 |
|---|---|
| Name Transcript | Ll_transcript_8634 |
| Sequence | ATCACATCACAATACACATTTTTTAAGCTTACCGTTAAAGAAAAAACATAACTTCATCAGCGTAAGCAATATTTTAAGGAAGAGAAAAGTGAGTTAAAAG CGATGGAAGGGAAAGAAATTCAAAAGCATTGATTCAAATGGATAATGCAGCGATTCCAATACCAATCATTTACATGTTGAAGTACACGCAATGAAAAAGC CAACAATTCCTCCAACACAATACTAAAATCTATTAATCAATTTATAATCACAGGCATCATCATCACCAACTCAATTACAACAAGACTAAGAAGAAGAAGA AAAATCTGATTTTTCTGAAGCTCTTCAATCACTTTCAACAAAAAATCCAACCTTCATTTCTTTCTGGTGAAAGAAGGACTCTAGTTATGGGAAATCAAGA ATCAACTTATGAATATCATGATGATTTTTTCCAACAACCTTATTCATGTTCTGCCAGTTCATGGAACACTGGTTATCATGAACCATTTTCTTATGCTGAG AGTTCGGTGAATACTAGTTATCAACACAAGCAGCTACCAACATATATAGCTGACAATTTCACTTCATTGGATCAGGTTTTCACTGCTAATTTTGCAATGA ACTATGATTGTCGGTATTAATTTTGTTTTAAATTGTGTTGCATTGTGGAGACTCCTGCAACCGCAATTACACGACTATAATTTAAAACCTTTTTCAGCAT TACTATGAAAATTTGTTTCTAATACACTAGAAAAGGCATTTACAATCAGGTTCATAGGAAAATTTTAAGTTTATTTGACTGTATGATAGCATAACTGCAT CTGTTATATGGTAATTGATCATTTGAATTTCTTTGTATATTAGAAAATCACTTGAGGATTTTTTAGGTATGTCACTCTAAATTACTAGTGTTGCAGTCTT GCAGACATACCAATAGTATTGAATATGTGGAACTTGCCCTCATAAATATGTAGACAGCCTTTTTTGGTTTGAGAATAAGTATGAAAGAACATGGTTCCAT TCGAAGAAGCTGTTCATATTACTCTTGGTTCAATTTGACAAGAAGGGAACTAACCATTGTGGAACTGGATTACTGTATCTTTGATGATGTTTTGAATATA CTTAGCTTTATCATGTTATATCTTAGGTTGTTTCTGCTCTGAGAGAAGCTGGCTTGGAATCTTCAAATTTAATACTTGGTATTGACTTCACCAAAAGCAA TGAGTGGACAGGCAAACATTCCTTCAACCACAAAAGCCTTCATTCTATTGGAAACACTCCTAATCCATATGAGCAAGCAATATCTATTATTGGCCGTACT CTCTCTTCATTTGATGAAGATAATCTGATACCATGTTTTGGATTTGGTGATGCATCTACACATGATAAGAATGTGTTCAGCTTTTATCGTGATCATCGCT CTTGTCATGGTTTTGAGGAAGCACTTGAACGCTACAGAGAAATTGTTCCACACTTAAAATTGTCAGGTCCAACTTCATTTGCCCCTGTAATCGATGCAGC AATTGACATTGTGGAGAGAAGCAATGGTCAATACCATGTTCTTGTCATCATTGCTGACGGACAGGTTACTAGAAATTCAGATACACCACATGGAAAGCTT AGTCCACAAGAACAAGCAACGATTAATTCTATTGTTGCTGCAAGTCACTATCCTCTCTCAATTATTTTGGTTGGGGTTGGAGATGGACCATGGGATGAAA TGCAGCATTTTGACGATAACATCACTAAGCGCTTATTTGACAACTTTCAGGTACTTGACATATGCATGCATATAGTTTCCTTGAGTTTGTAACTAGTATT GTTTAAGATAGAGGTAAACATTTTCTTCACATAATTAAAATTTTAAAAGCCCTTTCGGACCTTCTCCAGGACTTGTTCTGTGAGAATACACATTGATGGT ATGTGACTTACGAGGACTGCGAAAATGTTCAGTCTTCTATATCATTCTTAAGTCGGATATTATGAGTTTCTGCACTACTTTAATGTAAATTTCTTTTTAA TACTTTTATCGTGGATATATTAGCTACTTTGTGTTCCTTTCCGCCTCTCCAGTTTGTGAACTTTACGAAGATCATGTCTGAGAACAAAGAGGCATCAAAG AAGGAAGCAGCATTTTCACTTTCCGCCCTGATGGAAATTCCAATTCAGTACCGGGCAGCCCAAAATCTACAAGTTGCTAGTGGAGAATCAGTACATTATC AACGTAAAAGGCCTATGCCTCCACCTAAAGAAGTAATAGATCATGACAATGCAGTCCTACCAGTTCCAAGTATGGCAAATTTTGAATCGTTTGAGCCAAC AGCTCCACCTGCAACAGAATCAGTATGCCCTGTTTGCCTAACCAGTCCGAAGGACATGGCTTTTGGATGTGGTCATACAACTTGTAAGGAGTGTGGTGTG ACATTATCTTCATGCCCTATGTGCCGACAACAAATTACAACTCGCCTGAGACTATACACTTGAGCTGGAGTATTCTTAGCTCCTGGTTTATGATTTCTTA CAGTGCCGCTATTCCTATTCATAATGGATGTGTATTGAACACTATTTGTAAAATCACTGAATTGCAGTTAAGATAAAAAAAAATGTACAGAAAATTTGGG ATGTATGGTTTGTGTTTGAACAAAAAATATTATTGGATAGTCTTAGAATACTGGGATTATTTATATCATTGTTATATTTCTTGTTGTTGGGATTATTTAT ATCATTGTTATATTTCTTGTTGTTGGGATTATTTATATCATTGTTA BLAST |
| Tissue | flowers |
| Gene name | LI_gene_63922; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_8634
| Blastp | E3 ubiquitin-protein ligase RGLG3 from Arabidopsis with 59.23% of identity |
|---|---|
| Blastx | E3 ubiquitin-protein ligase RGLG3 from Arabidopsis with 77.25% of identity |
| Eggnog | copine family(ENOG410XPC8) |
| Kegg | Link to kegg annotations (AT5G63970) |
| CantataDB | Link to cantataDB annotations (CNT0001273) |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019464676.1) |
| Pfam | Zinc finger, C3HC4 type (RING finger) (PF13920.5) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |