| Id Trinity | FTRINITY_DN56966_c0_g1_i9 |
|---|---|
| Name Transcript | Ll_transcript_203415 |
| Sequence | TTGAGAAAAATAATAACAAGGTAGTTAATTTCCTCTCTGATTCAGTTCCATATTTTTCATCGTTCTTGTTCTTTTCACCATTCATTCTCTATATCTCTCT CAAATAACTGATTCAGGATTTTCACAAACCGAGTTCCTCACATGGCTGAATCGGTGGTGGAGCTTCCGAGTCGATTGGCGATTCTCCCTTTCAGGAACAA GGTTCTCTTACCTGGCGCCATCATCAGAATTCGTTGCACTTCCCCTAGCAGTGTGAAGTTGGTGGAGCAAGAACTTTGGCAAAAAGAAGAGAAGGGGTTG ATTGGCATCTTGCCAGTGCGTGATGCTGATGAAAGTAAATCACTGGGTACCGCTATATCTCAAGGAACCGATTCTTTGGACCAAAGCTCAAAAGTTCAAG GTGGTTCAGCTGATTCTAATAAGCTTGATACCAAAAAACAAAATGATGTGGTCCATTGGCATGCCAGGGGAGTTGCTGCTCGGGCATTACACCTATCAAG GGGTGTGGAGAAACCAAGTGGGAGGGTCACATACATAGTTGTTTTGGAAGGTTTGTGCAGATTTAGCGTCCAGGAACTTAGCACAAGAGGGACCTACCAT ACTGCAAGGATTTCTTCTCTTGAGTTGACTAAGACTGAGATGGAACTAGTGGAGCAAGACCAAGATTTCATAACATTGTCTCGCCAATTTAAAGCAACGG CCATGGAGCTTATTTCTGTTTTGGAGCTGAAGCAAAAAACCGGAGGAAGGACAAAAGTCCTTTTGGAGACTGTACCAGTTCACAAGTTGGCAGATATATT TGCCGCTAGTTTTGAGATAAGTTTTGAAGAACAGTTATCTATGTTGGATGCTGTTGACCCCAAAGTGAGGCTTTCAAAAGCGACTGAGTTAGTTGACAGG CACTTACAATCAATACGTGTAGCTGAGAAAATTACGCAAAAGGTTGAAGGACAACTGTCAAAATCTCAAAAAGAATTTCTTCTGCGCCAGCAGATGAGGG CTATTAAAGAGGAACTTGGTGATAATGATGATGATGAGGATGACCTGGTTGCCTTGGAAAGAAAGATGGAAAGTGCAGGAATGCCCCAGAATGTATCGAA GCTTGCACATAGAGAGTTGAGGAGGTTAAAGAAAATGCAGCCTCAGCAACCTGGGTATAATAGTTCAAGGGTTTACCTAGAGCTTCTTGCTGATCTACCC TGGCAGAAGGCCAGTGAAGAGATTGAATTAGACTTGAGAGCTGCACGGGAGCGACTGGACAGTGATCACTACGGTTTGGTGAAGGTCAAGCAACGAATAA TTGAATACCTGGCAGTTCGTAAGCTTAAACCAGATGCAAGGGGTCCTGTGTTGTGCTTTGTTGGACCACCAGGTGTCGGGAAAACATCATTGGCGTCTTC TATTGCTTCTGCACTGGGCAGAAAATTTGTGCGCATTTCCCTGGGTGGAGTCAAGGATGAGGCTGATATTAGAGGGCATAGGAGAACATATGTTGGAAGC ATGCCTGGGAGGCTTATAGACGGATTAAAGAAAGTAGCGGTTTGCAATCCTGTTATGTTGCTTGATGAAGTTGACAAGACTGGTTCTGATGTTCGTGGAG ACCCAGCTTCAGCATTGTTGGAGGTTCTTGATCCAGAACAAAATAAAACATTTAATGATCAGTATCCTAATTCCTATACTCTTTATGATGCATTCCCTTC AATCTGGTTGCCCCCCCCCGGGGATTTTATGTGTTGTTTCTGTTGAAAAATGATTTTGTTCGATGGAGAAACCTGTTCTATTGCCTTTTTACGATCAGGT TGTCAGCTCTCATTTGAATTTTCATAGTTTAAACAAGTTTGCTATTGATCTTGCTAGCAACATATCTTTGTATGGATTTCACCATCTCACCCATTATGGT GAGAAAGCAAAACTTGTTTTGTTCTTTTTTATTTTTAAATTGTAATTGCTGTGGATTCTCTTATGTATTCATCTTTCCACTTTCTAATAATGTTTCTTCT ATTATAAAAGAAAAAAAGATTACCTCTGTAGTTGTTCCTTAAAGTTTGCTAGCTATTTGAATGTTCCATTTGATCTATCCAAGGTAGTTTTTGTGGCTAC AGCAAATAGGATGCAGCCTATTTCTCCTCCACTTCTTGATCGGATGGAAGTAATTGAGCTTCCTGGATATACACCTGAGGAAAAGCTCCAAATAGCCATG CGTCATTTGATTCCAAGAGTTTTGGACCAGCATGGTTTGAGCACTGAGTTCCTTCAGATTCCGGAGGGGATGGTGAAACTTGTTATTCAGAGATACACTA GGGAAGCTGGTGTGCGAAATTTGGAGAGGAATCTCGCTGCCCTGGCTCGTGCTGCTGCAGTTAGAGTTGCAGAACAAGAGCATGTAGTTCCACTAAACAA AGGGGTGCAGGGACTTGCTGCACCACTTCTCGAAAACAGAATTGCAGATAGCACTGAAGTTGAAATGGAAGTGATACCAATGAGTGACAATAGTCAGGAC CTTTCAAACACATTCAGAGTTGCCTCTCCATTGGTTGTTGATGAAGCCATGCTTGAAAAAGTTCTTGGGGCTCCAAGGTTTGATGACAGAGAAGCCTCAG AACGTGTTGCATCCCCTGGGGTCACTGTTGGGCTGGTTTGGACTGCCTTTGGTGGAGAAGTTCAGTTTGTGGAAGCAACAGCAATGGCAGGGAAGGGTGA ACTGCATCTCACTGGACAACTTGGTGATGTAATAAAAGAATCTGCACAGATTGCACTGACATGGGTAACCAATCATATCTAATTGAGTTTTAAATCCTTT CATCTTCATTGGTTTGTTCTTACTAACTATACATGTTTTCTTGTACCATTGGAATATTAAAGGGTACAAGATCTCTTTCAAAATCTATGTCATTTTGTCT AGAGGCTCCTTTGTTCCCTTTGTATCTCTGTATGATATAACCGACTTTCTTTATTTTCTTAGACTGAATTTGTTCAATTGGTTTCAAGGCTGGACGATGT GTGCCACTGGACATTGGCTCTCATTTTTTTGCATTGAAAGTGTGACTCTTTATGGTTGACAACAACAACCAGCCTTATGCTTAACACATGGATTAAATCT AAAATCTTTACTTGTTTTTTTACTTGAAGGTATTGATTTTGTAGGTAAGGGCAAGGGCCGCTGATCTCAATTTGGCTGCTGCAGAGAGGGTTAACCTTTT GGAAGATCGTGATGTACATATACATTTTCCTGCTGGTGGTGTACCTAAAGATGGGCCCTCAGCCGGTGTGACTTTGGTCACGACATTGGTATCACTTTTC AGTCAGAAACGAGTGAGATCAGATACAGCTATGACTGGAGAGATGACTTTGAGGGGTCTTGTGCTACCTGTTGGTGGTGTCAAGGATAAGATATTAGCTG CACATCGTTATGGTATTAAGAGAGTTATCCTGCCTGAAAGAAACTTAAAGGACTTGGCTGAAGTACCATCATCAGTGCTAGCCAATTTAGAGATACTGCT TGCTAAAAAAATAGAAGATGTATTAGAGCATGCTTTTGAAGGTGGAAGCCCTTGGAGGAAACACTCAAAGTTATAGTACTACCTGTTGACTAGCAATTTG CACTGCATCTTTTGTGTTTCAATCACTTATGGCTTATATATGGATTCAACTTTGGGTCCAATCCTGATCTGTGATTGTTGTTGCGTTGGGGGATGAGCAT TTTGACGGAGCAAACATCAAGAAACCAACAATTTGGTATCGTCTCCATGTATAAATGGGACTTTATTATATTGTTTTGCTTGGGACCAGATATTCTAATG GAAGGTGATGCAGCTCTATGTTGTAACTTGTAGTTTTTCAACATTTCCCTTGTTGGCACCCACTGTGTTGTAATATCTCAATCCCATTTTAATTCTCATT ATAGCTGAAGCTCACTTACATTGAATGTGTTGATTATCAAATATAAAATAGTAAAATACTCCCACCATTGTCAATCTTTTGTAGTTTAAGGAATTGGCTG CTTCAAAACTTAGAAAACTCAAATGTTGTAGTTTCCAAGACACATTTTCCATATTTGGTTTCATAAAATAACATACAGTAAAAACCTATATCCAATGCAT TTATCAATTCATAAAGCT BLAST |
| Tissue | flowers |
| Gene name | LI_gene_64699; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_203415
| Blastp | Lon protease homolog 2, peroxisomal from Arabidopsis with 80.82% of identity |
|---|---|
| Blastx | Lon protease homolog 2, peroxisomal from Spinacia with 79.7% of identity |
| Eggnog | ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner (By similarity)(COG0466) |
| Kegg | Link to kegg annotations (AT5G47040) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019446006.1) |
| Pfam | ATP-dependent protease La (LON) substrate-binding domain (PF02190.15) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |