| Id Trinity | FTRINITY_DN57015_c0_g1_i2 |
|---|---|
| Name Transcript | Ll_transcript_173191 |
| Sequence | GGAGCTGACAAATGCAATGGACCGCAATAAGAAGCGTGCGAAGAAGCTTCTTGCGAAAAGAAGAGCTAAGGTTTTAATCTTCACTGCTACTAAATAAGTT GGGATTAGATGCATACTTGAATGAGTTTTCAATTCTATGAATCAACGTCAATAATTTTTTTTATGTCTATAGTGTTTGTAAATTATACATCTTGTTTTGT CCAATAAATGGTTTCAGGGCATGCCTAGGATTGAAAACTTATCTATTTAGTCCTCTATGTATAACATTCTAGACTGGGTTATTTTTTTGTTCCTTTCTTA AGTGGATGACTTCAGCTGATTCCTTTCTGTAAATATTTGAACTTTATAGGACAAAGCTCGAAAAGCAACAGGGATGCAAATGGACGCAGTAGAAGATGGT TATGTTGATCATGAGTTGTTTTCTCTTTCTGCTATAAAGGGAAAGAAGGATCTTGCAGCTGTTGATACCACTGAATATGAAGGTGATGAGGGTGAAGTGT ATGACAGTGATAATGAAAATATCCATGAAGGATCAGAGCATGCATCCAGTGGCTTGGAGGATTCTGATGAAGAGCGTAAAAGATATGATGAACAAATGGA TGAGTTTCTGGAAGGAGCTTATGAGCGGTTTGTGGTAAAAAAGGAAGGAACTGCAAAGCAGCGGAAGCGTGTTAAGAAGTCATATGATGCAGGGAAAGAA CTTTTGGAGGGTGGCGAGGATGATGTTCAGCCCAAATATGATTCAGACGAAGATCTGGCTGTTCAAGAAGCAAATCCTTTAGTGGTGCCACTTAATGATG GTACAGGGCCCACCCAAGAGGAAATCACAAATAGGTGGTTTAGTCAGGATGTTTTTGCTGAAGCTGCAGAGGAAGGAGACTTTGAGAAACAAGAGAGTGA AGATGAAATGGATATAGATGGGCACAAGGATAAGAAGTCAACAACAACAGCAGTCAAGGAGAAGAAATCCATTCTCAAAAAAGCCAAAGAAAATAAAACA GAAGCTCCTGCAGCTGTGGTGATAGACAAACCCCAATCTCAAGCATCTAAGGCAGACGATGATTTTGAGATTGTTCCTGCGCCTGGTACTGATTCTAGCG ATGATTCATCCTCTGAATCAGAGGATGATGATATTGAAACCAAAGCTGAGGTATTGGCTTGTGCTAGGAAAATGCTGAGGAAAAAGCAACGGGAGCTGAT GCTTGATGATGCATATAACAAGTACATGTTTGATGACGAGGGATTGCCTAAGTGGTTTTTAGACGAGGAGAAGAGGCACCGTATACCAGTAAAGCCAGTT ACCAAGGAGGAAATTGCTGCAATGAAAGCACAATTTAAAGAAATTGATGCTCGACCTGCGAAGAAGGTGGCGGAGGCAAAAGCAAGAAAGAAACGTGTGG CAATGAGGAAGCTTGAGAAGGTACGTAAGAAGGCGACTGCTATATCTGATCAGACAGAGATATCTGATCGTTCGAAGAGCAAGCAAATAGAAAAACTGTA TAAAAAGGCAACTGCTCCACAGAGGACTAAAAAGGAATATGTGGTTGCAAAGAAAGGTGTACAAGTTAAGACTGGGAAGGGAAAAGTCCTTGTAGATCGT AGAATGAAGAAGGATGCTAGGACACGCGGAATGGGTAAGTCAGGAAAAGGGGGTCCCAAGAGTAAGGGCAAGGGTGGCAAGGGTTCCAAGGGAAAAACAG CTTCAAAGGGCTCAGCCAAGAAGGGCGGAAGAAAGGGGAATAAATGAAGCTAGGTTTGGTTAATATAATACCAAGTTCTGAGTCATGGGTTTTGTGTTAT TTGCCTGGCGCAATTTTGTTTGCTTAATTTTATTTCATGCATTGTTTTAATTGGTTGTGTAACAGATGTTATGAAAAGAACTGATAAACTGTGTTGTCCT TAATAATTTATAAATCTTAAATTTGTGTTGAATGCTAGATAGAAGGAAGATTGTTGATGTTATCGGAAAAGAAACCTTAGCTGTTGTAGTTGAAATTGTT TTTCATCTTCTATTAATGTTACCTTATTAGCTCT BLAST |
| Tissue | flowers |
| Gene name | LI_gene_65090; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_173191
| Blastp | pre-rRNA processing protein FTSJ3 from Pongo with 34.83% of identity |
|---|---|
| Blastx | Putative rRNA methyltransferase from Dictyostelium with 44.72% of identity |
| Eggnog | Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit (By similarity)(COG0293) |
| Kegg | Link to kegg annotations (100172587) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019413490.1) |
| Pfam | Spb1 C-terminal domain (PF07780.11) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |