| Id Trinity | FTRINITY_DN57031_c4_g1_i5 |
|---|---|
| Name Transcript | Ll_transcript_172442 |
| Sequence | TACTAATCCTCTTATCCACAAAAATATCATAAAATGATACTTTATTTATTATAAGTGAGGATTTAGCATTACTCCTTATATTATTAGTCTTTGCATTGTT GTTACATAGGAGATGATGATTCATTTACTCAAATAGCAAGTCTAAAAAATTTATTATGTATCTTAATCATTAATTAAAAAAATCTAATAATTTAAACGAG TAATATTAAATTTTCCTATAATCAATGACTATAGAGAAAATAAAAAAAAACTTATTCTTATTGAACTTAATTCTCTACTCAAATTTTGCAACGTTGGGTA GCCGAAAAATAAAATTTTGCAATGTTAGTGGGAGACTGGGAGGCTAGGGCATAGTAATCCGTTACACATAAATGAAATGACAAAGTAGTCCTTTTTATGC ATCATCAGGGTTTTACAAAATCTCCGAGGTTTGGAATAGCAGAAAGGGTTGAGACTCGAGACTGAGAAAGAGCGATGGAAGGTGTATCCTACGCGCGCAT GCCCAGGGTCAAAATCCGCGAACTCAAAGACGACTACGCCAAATTCGAGCTCCGCGACACCGACGCCAGCATCGCCAACGCGCTCCGGCGCGTGATGATA GCAGAAGTACCAACAATCGCCATCGACCTCGTCGAAATCGAGACGAACTCTTCTGTCCTTAACGACGAGTTCTTAGCGCACCGTTTAGGGCTTATCCCTC TGACCAGCGATAGAGCAATGTCGATGCGGTTCTCGCGTGACTGTGACGCGTGTGACGGTGACGGACAGTGCGAGTTTTGCTCCGTCGAGTTTCATCTGAG AGTGAAATGTATGACTGATCAAACACTCGATGTGACGAGCAAGGATCTCATAAGTTCTGATCATACTGTTACTCCTGTTGATTTTAATGACTCTTCTCTC ATTGAATCATCTGATATTAACACTAATAGGGGGATTATAATTGTGAAGTTAAGGAGAGGACAAGAGCTGAAGCTGAGAGCAATAGCTAGGAAGGGTATTG GTAAAGATCATGCTAAATGGTCGCCTGCGGCCACTGTCACTTTCATGTATGAACCAGAAATCCACATTAACGAGGATTTGATGGAGTCCTTGACACTTGA GGAGAAAAAAGAATGGGTTGAAAGTAGTCCTACCCGTGTATTTGACATTGATCCAGTAACTCAAGAGGTTGGGTTTTTCTGATTTGTTTTATTTTGATTG TGTTGGAAAGGTTGTGCACTTTGCACTAATTTCATCACTAATGCTAGTATTACTATTATCTGATCCTTATCTGGTGCTTAGTTGTTGTTGCTATGGTCTA CCTAGTTTGATACCTCACTAATTGCTTCTGAGAAATCTGTGATAATATACTTGTCTGGTATACTATACTGTCTGACACAGCTTTTTTAGATTTTAGGTTG GATAGATCAGATAATATAGAATTAGGCAGGATAAGTACTTGATGGATACTGGATAACTATTATTTCCATTTTCCTGCATCACTATCTATTTGACTTTTTG GGTTGGGTAGAGAAGAAAGTATAATTAGATGTGCTTTTTATTTTCTTTCTGCATTAAAGGATAGACAACTGTAATTTGATGTTTGGAATGATTACGTGGT GCTTCCTGTGAGTAATTTGCTTTCTAATGGTTTTCAAGACTTGTTTTTCAATTGGTTATGGGTATGACCTCTAATATAAGCTTACAGAACCAAATATGCA GCAAGCGAGAGACCATTATTCTGCATATTTTGGGGATGCTAGCTGTCATCTGGACAATAATATATTTGCTTTCAAGAGTATACGCATTAGTATGCTGACT TTTATGTAGGAATTCAAGTTCATCTTGGAGTAAGGATTTTGTTCCGGTGTACATTTATCTTATCATCCTTCATCCGTCAATTTCTTTTTCATCCTGCTTA AAGTTGCTTCCATCACTCCCAATGTTGGAGGCTGAGTAATAGGAAAATTCTTCACTCAGAACTTATAGAAATTGCGCCACTTCATACAGTATCATTCTAG AATATGAACATACTTGAGTGCAGAAAATAAGATGCAACTTAAGTGCCAAAAGTGTAAGAAGAAGAAGATATTGATACACCTTCTGCTAAAGCATTGAAAG TTCTTGAAATTGATGTCTTATCTATGCATGTCAATTACTTTGTGTTGTAAACATTTTTGTCTTTGTGAATTGATGATATATATGATACAGAATAACCATT TCCATCATAATATATCTTTTATCAACTAAAAAACATTTTAAGGTTCTATTTGTAATTTATTGCTATGAATCCTTCCTTGCTGTATTGTGCACTATTATAT TATTAAAACATAAAGATCAAAGTTTGCAATCCTTTGATTGTTTTGTTTGGAGCTGATTTTTTGTGACTAATATTTTAGCATTTTATTAGGTTTTGGTGAT TGACCCTGAGGCATACACCTATGATGATGAGGTGATCAAGAAAGCAGAAGCAATGGGCAAACCTGGGCTTGTAGAAATCAATGCAAAACAGGATAGCTTC ATATTCACAGTTGAATCTACTGGCGCTGTTAAAGCTTCTCAGCTAGTACTGAATGCCATAGAAATTCTGAAGACGAAGTTGGATGCGGTGCGGCTATCTG AAGATACCGTGGAGGCTGATGATCAGTTCGGGGAGCTAGGTGCACATTTGCGAGGAGGATGATCGAATCGATGGAAGGATTTCACTCTTTGTTTTCCTGA ACTTGTTTGTTGCATGTTGTGTTTAACTGAATAGCTGCAGCATGTGCTACCTCATTGAACCAGAGATGCTAATTGTCATTATGGTCCCTTTTAGATAGAC ATTTATCTTTGGAATTTAATACTATATGATATAATCTATTATATTTTTCTTGTGTCAGTTGAGTTTTTGAACACCTTTGTCATATGTAGCATACTTAGAA TACTAGTTAAATGTATTGGTGGCAGAGCTAATTTAGTTATATAATGAATTATAAACAAATGAAATTGTTTAAATTAATAATATTTATTTAGTAATTAGTT TTTCAGAC BLAST |
| Tissue | flowers |
| Gene name | LI_gene_65234; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_172442
| Blastp | DNA-directed RNA polymerases II, IV and V subunit 3 from Arabidopsis with 78.54% of identity |
|---|---|
| Blastx | DNA-directed RNA polymerases II, IV and V subunit 3 from Arabidopsis with 78.54% of identity |
| Eggnog | DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (By similarity)(COG0202) |
| Kegg | Link to kegg annotations (AT2G15430) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019445856.1) |
| Pfam | RNA polymerase Rpb3/Rpb11 dimerisation domain (PF01193.23) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |