| Id Trinity | FTRINITY_DN57038_c10_g1_i3 |
|---|---|
| Name Transcript | Ll_transcript_172837 |
| Sequence | GTTGCCGAATCATTCTGATTTTTCAATAAATGGAGCAAAAACCGACGACACCGGCGGAAGAAACGGTGGCGATTCCATCGTCCTCCGTGGTAGCCGACGA ATCAAAACCTTCTTCTCTTTTTCCTCTTTTCTCGATACCTAATTCCTCATCTCTTCAGACTACAAATTCGGTTCCTCAATGGCTTTGCAACTCCAGCTTC AACTCCGACGTTTCCCTCATAAACGACGCCGCCGCATCTCAACTCCACCACGAAACCGCCGAATATCCATCGCAAGACGACGACGGAGATAATGATGAGA AGCAACCGTTTCGTCCCTCGTACGAGATTTTGAAATCTTCGGAATCCGACGGAGAGAGAAGGGAGAGAGGGAAGAAGGATAAGAAGAGAAAGAAGAAGAA GCGGAAACATGAGAGAAGCGAACTTGATGGTTACGGTTCGAGAAAGTCTCGCGTTCGAGCTTGGGCTGATTCGGAGACTAACACTTCCAAAGATTATTAC ATTGATTCTCATGGCGATCCTGATAACCTCGCATTCGGAAGTATGTACAGAATGGATATTGCTCGGTACAAATCTTACAATCCTTCGAAACTATCTGGTC TACTACATGTTCGTGGTTTGTATTCGTGGAACCAGACTGGCTCACTCTGGGAAAGAGATGGCGATGTTGATTCATTGGACAGTAAAATGAAGTCTGGTGG TCGTTATTGGTCTGGGAAGTATATTGCTTTGGAACGACATAAGAGCTTTAAGCGTGTTCGTCTTGTTACGCCAAAAATGTCTGCTGCTAGTGCTACGACG CAAAATGACTTCATACCTTTATCAGAGGTTGGGACATCTCATGGAGCTGTGGACAGTGATCCTGTCTCTGAAACTTCTGCAGCACTTGAGGAATCTTGGG AAGATGAAATGTTGAACAAAACTCGGGAGTTCAACAAGCTGACAAGGGAGCACCCCCATGATGAAAAAGTTTGGTTAGATTTTGCAGAGTTCCAAGATAG GGTTTCAGGGATGCAACGACAGAAAGGTGCTCGCTTGCAAACGCTTGAAAAGAAGATTAGCATTCTGGAGAAGGCAGTTGAGCTTAACCCAGACAATGAA GAGCTGTTGCTTTGTCTTTTGAAATCTTATCAAAGGAGAGACAACTCAGATGTTTTAATTGGGAGATGGGAGACAATACTTTTGCGGCACTCTGGAAGTT ACAGATTATGGAGAGAATTCTTGCACGTCGTTCAGAGAAACTTCTCCAGATTTAAGGTTTCAGAGATTAGGAAGATGTACACACATGCAATTGAAGCTTT ATCTGCTTCATGCAGCAAGCACTCTAGGCAGGTTCACCATTTTTATGACCCTTCTTCATCGGATCCTGTCATTGTTCAGCTAGAACTTGGTCTTGTGGAT ATATTTGTCAGTCTCTGCAGATTTGAGTGGCAGGCTGGTTATAGGGAATTGGCTACTGCTTTGTTTCAGGCAGAAATTGAGTTTAGTTTGTTTTGCCCAC CTTTGCTCCTCACAGAACAGAGTAAGCAAAGACTGTTTGAGCATTTTTGGAATAGTGATGGTGCTAGAGTTGGAGAAGAAGGAGCTCTTGGTTGGTCCTC GTGGTTGGAGAAAGAGGAGGAAACTAGGCAGAGAATTATGAAGGAGGAGCTCTCACAAGAGAATGAAGCTGGTGGTTGGACTGGTTGGTCAGAACCATTT TCTAAAGATAAGGAGGGTATTATCGATGTTGAAAATGAAGCCAACAATGATTTGGTTCTGGAGGATATTCAAGATGAAGATGAACATAAAGATGTTGAGC CAGAAGTTGATACTGAAAGTTTGATGAAAATGCTAGGAATTGATGTCAATTCTGGGGATGGCAATGAAGTGAATGAAGTTTCAACCTGGATCAAATGGGC AGAGGAAGAGTCTTCTAGAGATTGTGATCAGTGGATGCCAATTCGTAGGAAATCAGGAACAACCTCTGCTAGTACTGGAGCTCATGAAACAGAAGAAGAT GAGCATCTCTTGAGAACCATATTGTATGAAGATGTGAATGAATACCTGTTTTCCTTGAGCACAGCAGAGGCTCGGCTATCTTTGGTGTCCCAATTCATTG ACTTCTATGGCGGGAAGATATCTCAATCGATTTGCTCAAACAGTTCGAGTTGGACAGAGAGTGTCCTTAGCTTGGAGGATCTGCCAGATTCCATGTTAGA GAAGTTGAAATGCATTCACGAAGTTTTAACACGAACACAAAGCAGTCCCATTGGTTTCAGTTTTGAATTCATATCAGGCAGTTTGTCTAAGAATGCTGGT ATGATGAATTTTCTAAGGAATGTTGTCCTGCTCTGTTTGTCTGTTTTTGCGCGTAATTACGTATTGGAAGAAGCTGTCCTTATTTCTGAAGAGCTTTATG TTACAAAAATGAGTCCTTCTAACTCGATGGTTACACCATGTCGAGCTTTGGCGAAGTCTCTATTAAAAAGTGATCGACAGGATGTATTGCTATGTGGTGT ATATGCAAGGAGAGAGGCTAATTATGGCAACATTGATCTTGCAAGAAAAGTTTTCGATATGGCTTTGTTATCTGTGGATGGGCTTCCTGCGGAGCTACAG TCCAATGCTCCTCTTTTATATTTCTGGTATGCTGAGATGGAGCTTGCGAATAACTCCTATGACATTCGTGAATCTTCACATCGTGCAATACATATATTAT CATGCTTAGGAAGTGGTACGAAATACAGCCCATTTAAAAGTCAGGCATCAAGTTTGCAACTGCTTAGAGCCCATCAAGGGTTTAAAGAAAAAATGAGAAC AGTACGATCATCATGGATTCGTGGTATAATAGATGACCAGTCTGTATCTCTAATATGTTCAGCTGCATTGTTTGAGGAGCTCACCACTGGATGGGATGCA GGTGTTGAAGTTTTAAATCAAGCTTTTGCAACTGTGCTTCCAGGTTATGTATCTTCCGTCGTTGGTCCTCGTTTTAGAAACATTACAGCTCTAAGACAAG TGCATTTTTGTTTTGAAGTTCACAAGTAGACACTCAATGTAGTTTTTCAAATATTTAATCTGCCCCCAAAAGTCTTCTTGTAGACATCCTCAAGTGGAAA CCCATGAAACTACTTTTATTGTTGAGATTGTGTACAGATTTATTTATTTAGAATTGCAGGGTGGGATTATTTACTTATTCATTCTGTTGGGGTGGGATTT TTGTGGAAACTTTAGTGAAATAGTAAATAGGTTAAAATCAGTGTACCAATTATATTCTACACATGGTTGTTGAAATTTGGTACGTTAAGTATATATGGTT TTTCACCTTGGGCTGATCTCTCATAAATTTCATTCAAGTTGAATGTTTTTTGCTCACCATCCATGGAGATTGTTGCTAATATTTGATGTGTTATATTCCT GATCAGGTGATACATGCTTGTTTCTCTTTAGTGTTATATGAATTCATTCCTTTGTATCATCTGATCTATAGACATTTGGACTTGGTGGAATTTTTAATAC ATTTTCTGTAACTTAAATGGAATGAAATTTAACATGATTGGAGCTGATCCATGGTAAATAATTGATAAAAATTCCAGTGACTTAAAAGCACTGAAGGCAA ACAATGTGGTACAAAACTCAACCTTGGTATATGATGTCTAGCACGGTGTTGATCTTTTATATTGCAGCATAAGTGTTGATTCTATTGCTTATAATGTCTA TATGTATGCTTGCAACCTACAGATAGGAGAAGCCATAGCTATCAACTCGAATTTTTGTTTAACTATTACATAAGGATGCTTCAGAAACATCAGAGACAAT CAAGTCTGGTGAAAGTCTGGGAATCAATTTCTCAGGGCCTCCAGATATATCCCTTCAGTCCAGATCTTCTTAAAGGTGTAGTGGAGGTTGGCCATTTGCA CACTACATCTAATAAATTGCGGTGGATGGTAGATGACCTTTGTTACAAGAAACCATCTGTCCTTCTCTGGCTTTTTGCATTGTGCTATGAGATGTCTAGA GGTGGCACCCAACACAGAATCCGTGGGTTGTTTGAGAAGGCATTGAGTAACGATAGGCTTTGCAGCTCAGTTGTACTGTGGCGTTGCTACATTGCGTATG AATTGGACATTGCACATGATGCTTCTGCAGCTCGACGTATTTTCTTCCGAGCTATCCATTCTTGTCCCTGGTCAAAAAGGTTATGGTTAGATGGGTTTCT GAAACTGAACTCTGTCCTGAATGCAAAAGAGCTATCGGATCTCCATGAAGTTATGGTGGATAAGGAACTGAATCTGAGAACTGATATTTATGAAATCCTT TTGCAAGAGTCATGATGACTTTTGCTCTCCCGTGCTGCCAGAATTTCGTTCCCGGGAGGGGGCAAGCATGGGTGCTGCCCCCTTACTATATCTTGTAAAA TCCTGAGATAACTTTGATTTTATCCTTACATGACAAAGTTTTACATTGTCAATATGATATAATATTATGATTTTAATATTTATTTTAATGAGGATGAATA TGTTTGACTTTCAAAAATCCACACATGGAAGATTTTGGAGGGTTCGAGAAACCCTCCAAAACCTTCACATCTCCTTCATCCAACTCCCAAACAAGGGGAA GGCTTTCCAAAGCCATCATTTCCCCTCCAAAACTTCACTTCCAGACAAAGCCTAAGGGGTGATAGGTTAAGTGATACATATTTGTGTATGAAGAAAATTC TTGCAGAGAGAGGCAGCTATATTGTGGATTTTCTTGGCTTGAATAAGAATGACTCCCATGAATGAAATGTATGGGTAGAAGAAAGATTCGTGAGGTGGGG CATACAGTTCATTTTACTTCTTTTCCTATTTTTACTAATTTAACAAATCAAATGTAGTGATATACATTTTTGGACAATAAATTTTATTAGGAATATAGAT TTTACATATTATTTATTTGTCTTTATTTATGTATTACTTCAATCGTATTATTCTAATAAGTTTAT BLAST |
| Tissue | flowers |
| Gene name | LI_gene_65273; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_172837
| Blastp | Protein NRDE2 homolog from Homo with 25.68% of identity |
|---|---|
| Blastx | Protein NRDE2 homolog from Homo with 25.25% of identity |
| Eggnog | nrde-2 necessary for RNA interference, domain containing(ENOG410XPGD) |
| Kegg | Link to kegg annotations (55051) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019430340.1) |
| Pfam | NRDE-2, necessary for RNA interference (PF08424.9) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |