| Id Trinity | FTRINITY_DN57038_c10_g1_i5 |
|---|---|
| Name Transcript | Ll_transcript_172839 |
| Sequence | CTGGTTTCTTTTCCCCTTCGAAACAGTTCTTTCTGTCTGAGTATTGTATTTATTGTATTAGTAAAGAATGATGGGAGTTCTATATAAATACCATGCAGAA TGGATATTGCTCGGTACAAATCTTACAATCCTTCGAAACTATCTGGTCTACTACATGTTCGTGGTTTGTATTCGTGGAACCAGACTGGCTCACTCTGGGA AAGAGATGGCGATGTTGATTCATTGGACAGTAAAATGAAGTCTGGTGGTCGTTATTGGTCTGGGAAGTATATTGCTTTGGAACGACATAAGAGCTTTAAG CGTGTTCGTCTTGTTACGCCAAAAATGTCTGCTGCTAGTGCTACGACGCAAAATGACTTCATACCTTTATCAGAGGTTGGGACATCTCATGGAGCTGTGG ACAGTGATCCTGTCTCTGAAACTTCTGCAGCACTTGAGGAATCTTGGGAAGATGAAATGTTGAACAAAACTCGGGAGTTCAACAAGCTGACAAGGGAGCA CCCCCATGATGAAAAAGTTTGGTTAGATTTTGCAGAGTTCCAAGATAGGGTTTCAGGGATGCAACGACAGAAAGGTGCTCGCTTGCAAACGCTTGAAAAG AAGATTAGCATTCTGGAGAAGGCAGTTGAGCTTAACCCAGACAATGAAGAGCTGTTGCTTTGTCTTTTGAAATCTTATCAAAGGAGAGACAACTCAGATG TTTTAATTGGGAGATGGGAGACAATACTTTTGCGGCACTCTGGAAGTTACAGATTATGGAGAGAATTCTTGCACGTCGTTCAGAGAAACTTCTCCAGATT TAAGGTTTCAGAGATTAGGAAGATGTACACACATGCAATTGAAGCTTTATCTGCTTCATGCAGCAAGCACTCTAGGCAGGTTCACCATTTTTATGACCCT TCTTCATCGGATCCTGTCATTGTTCAGCTAGAACTTGGTCTTGTGGATATATTTGTCAGTCTCTGCAGATTTGAGTGGCAGGCTGGTTATAGGGAATTGG CTACTGCTTTGTTTCAGGCAGAAATTGAGTTTAGTTTGTTTTGCCCACCTTTGCTCCTCACAGAACAGAGTAAGCAAAGACTGTTTGAGCATTTTTGGAA TAGTGATGGTGCTAGAGTTGGAGAAGAAGGAGCTCTTGGTTGGTCCTCGTGGTTGGAGAAAGAGGAGGAAACTAGGCAGAGAATTATGAAGGAGGAGCTC TCACAAGAGAATGAAGCTGGTGGTTGGACTGGTTGGTCAGAACCATTTTCTAAAGATAAGGAGGGTATTATCGATGTTGAAAATGAAGCCAACAATGATT TGGTTCTGGAGGATATTCAAGATGAAGATGAACATAAAGATGTTGAGCCAGAAGTTGATACTGAAAGTTTGATGAAAATGCTAGGAATTGATGTCAATTC TGGGGATGGCAATGAAGTGAATGAAGTTTCAACCTGGATCAAATGGGCAGAGGAAGAGTCTTCTAGAGATTGTGATCAGTGGATGCCAATTCGTAGGAAA TCAGGAACAACCTCTGCTAGTACTGGAGCTCATGAAACAGAAGAAGATGAGCATCTCTTGAGAACCATATTGTATGAAGATGTGAATGAATACCTGTTTT CCTTGAGCACAGCAGAGGCTCGGCTATCTTTGGTGTCCCAATTCATTGACTTCTATGGCGGGAAGATATCTCAATCGATTTGCTCAAACAGTTCGAGTTG GACAGAGAGTGTCCTTAGCTTGGAGGATCTGCCAGATTCCATGTTAGAGAAGTTGAAATGCATTCACGAAGTTTTAACACGAACACAAAGCAGTCCCATT GGTTTCAGTTTTGAATTCATATCAGGCAGTTTGTCTAAGAATGCTGGTATGATGAATTTTCTAAGGAATGTTGTCCTGCTCTGTTTGTCTGTTTTTGCGC GTAATTACGTATTGGAAGAAGCTGTCCTTATTTCTGAAGAGCTTTATGTTACAAAAATGAGTCCTTCTAACTCGATGGTTACACCATGTCGAGCTTTGGC GAAGTCTCTATTAAAAAGTGATCGACAGGATGTATTGCTATGTGGTGTATATGCAAGGAGAGAGGCTAATTATGGCAACATTGATCTTGCAAGAAAAGTT TTCGATATGGCTTTGTTATCTGTGGATGGGCTTCCTGCGGAGCTACAGTCCAATGCTCCTCTTTTATATTTCTGGTATGCTGAGATGGAGCTTGCGAATA ACTCCTATGACATTCGTGAATCTTCACATCGTGCAATACATATATTATCATGCTTAGGAAGTGGTACGAAATACAGCCCATTTAAAAGTCAGGCATCAAG TTTGCAACTGCTTAGAGCCCATCAAGGGTTTAAAGAAAAAATGAGAACAGTACGATCATCATGGATTCGTGGTATAATAGATGACCAGTCTGTATCTCTA ATATGTTCAGCTGCATTGTTTGAGGAGCTCACCACTGGATGGGATGCAGGTGTTGAAGTTTTAAATCAAGCTTTTGCAACTGTGCTTCCAGATAGGAGAA GCCATAGCTATCAACTCGAATTTTTGTTTAACTATTACATAAGGATGCTTCAGAAACATCAGAGACAATCAAGTCTGGTGAAAGTCTGGGAATCAATTTC TCAGGGCCTCCAGATATATCCCTTCAGTCCAGATCTTCTTAAAGGTGTAGTGGAGGTTGGCCATTTGCACACTACATCTAATAAATTGCGGTGGATGGTA GATGACCTTTGTTACAAGAAACCATCTGTCCTTCTCTGGCTTTTTGCATTGTGCTATGAGATGTCTAGAGGTGGCACCCAACACAGAATCCGTGGGTTGT TTGAGAAGGCATTGAGTAACGATAGGCTTTGCAGCTCAGTTGTACTGTGGCGTTGCTACATTGCGTATGAATTGGACATTGCACATGATGCTTCTGCAGC TCGACGTATTTTCTTCCGAGCTATCCATTCTTGTCCCTGGTCAAAAAGGTTATGGTTAGATGGGTTTCTGAAACTGAACTCTGTCCTGAATGCAAAAGAG CTATCGGATCTCCATGAAGTTATGGTGGATAAGGAACTGAATCTGAGAACTGATATTTATGAAATCCTTTTGCAAGAGTCATGATGACTTTTGCTCTCCC GTGCTGCCAGAATTTCGTTCCCGGGAGGGGGCAAGCATGGGTGCTGCCCCCTTACTATATCTTGTAAAATCCTGAGATAACTTTGATTTTATCCTTACAT GACAAAGTTTTACATTGTCAATATGATATAATATTATGATTTTAATATTTATTTTAATGAGGATGAATATGTTTGACTTTCAAAAATCCACACATGGAAG ATTTTGGAGGGTTCGAGAAACCCTCCAAAACCTTCACATCTCCTTCATCCAACTCCCAAACAAGGGGAAGGCTTTCCAAAGCCATCATTTCCCCTCCAAA ACTTCACTTCCAGACAAAGCCTAAGGGGTGATAGGTTAAGTGATACATATTTGTGTATGAAGAAAATTCTTGCAGAGAGAGGCAGCTATATTGTGGATTT TCTTGGCTTGAATAAGAATGACTCCCATGAATGAAATGTATGGGTAGAAGAAAGATTCGTGAGGTGGGGCATACAGTTCATTTTACTTCTTTTCCTATTT TTACTAATTTAACAAATCAAATGTAGTGATATACATTTTTGGACAATAAATTTTATTAGGAATATAGATTTTACATATTATTTATTTGTCTTTATTTATG TATTACTTCAATCGTATTATTCTAATAAGTTTAT BLAST |
| Tissue | flowers |
| Gene name | LI_gene_65273; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_172839
| Blastp | Protein NRDE2 homolog from Homo with 24.86% of identity |
|---|---|
| Blastx | Protein NRDE2 homolog from Homo with 24.91% of identity |
| Eggnog | nrde-2 necessary for RNA interference, domain containing(ENOG410XPGD) |
| Kegg | Link to kegg annotations (55051) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019430340.1) |
| Pfam | NRDE-2, necessary for RNA interference (PF08424.9) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |