| Id Trinity | FTRINITY_DN57058_c2_g1_i18 |
|---|---|
| Name Transcript | Ll_transcript_172499 |
| Sequence | AACTATCACAACACCAACCATATCCCACTATTAAGAACCACAATCCCACTCTTAAGAACCACAATCCCACCATCAATGACTACACAAATATATTTTATCA AATAATATTGATCGTTGACTTTAGGAGAAATTGTAGTTCTTAATTTGGAATCTTAAAATTTTTCAGTGATATACGTTCTGCTAGTTTTGAAAATTATCTA CAAACCATTTCATTTCACCGTGAGTCTAACTGTCTAAGACTAAGATCAAAGGTTGTTGACAGTGACTGTGAGTAATGTTGGACATAAACATATTCAGAGA AGAAAAGGGTCACGACCCTGAAACCATTCGCAACTCTCAACGCAGTCGTTTTGCCAGCGTCGAAGTAGTCGATGATGTCATCAATCTCGACAAAGAATGG CGAAAACGTCAATTTGAGATGGAGAATCTTAAAAGAGATTTCAACAAGATCAATAAAGAAATCTCCAAACTCAAACGTGTCAGTGTCCCTCTCTCATTTT CTCTTTTTCTATTTACAAAGATGCAAACTTTACTCAAAATTATATAGACCCAAAAATCGAAATCCTCATTTCATTCATATAATGAGCCAAAGGTATTTTT TGTTCTTTCAAAGAACGTTTTTATATTTAAAAGAATCACTTTTTATGTTTATATGCTTGTTTAGTTGACTTTTTTTCTAAAAACTTTTATACGAAGACTA ATTGATATTTAGCATTTGTGAATTTCAGCTTTTAGGAGAAGCTCAAATCACTTATCACAAAAATGATCCTGCTAAAAATATATCTGGGGTTTCACTTTTG TTCTAAATCATAATGAAGGCCCCATTGTTTTTGTAACTGGTTAGTAAAACATTTTGCATGTGCATGTTAGGCTGGTGAAGATGCATCTAAGTTCATTATT GAATCAGAGGAAACTAAGAAACTGATAGCAGAGAAAGAGGTTGAAGTGAGGGAAACTCTGTCTCTCTTGAATTCCAAATTGGAAACTATTGGGAACCTTG TCCACCATAGTGTTCCAGTCAGTGATGATGAGGCCAATAATAAAGTGGTTAAATCATGGGGGGAGAAAAGAGTGGAGCCTGAACTAAAGAATCATGTGGA TCTAGTTGAGCTCCTAGGGATAGCAGATACCAAGAAAGGAGCTGATATAGCGGGAGGTAGAGGTTTCTATCTCATAGGAGATGGTGTTCGTTTGAATCAG GCTCTAATCAACTTTGGACTTGACTTTTTGGAGAAAAGGGGATATACTTTATTGCATACTCCTTTCTTCATGAGAAAAGATATAATGTCAAAGTGTGCTC AATTAGCCCAATTCGATGAAGAGCTTTACAAGGTAACGGGTGAAGGGGATGACAAATATCTGATTGCAACTTCAGAGCAGCCACTTTGTGCATATCATTT AGATGATTGGATCCACCCTACCCAGCTACCCATAAGATATGCTGGATATTCATCATGCTTTCGTAAAGAAGCTGGGTCTCATGGCCGAGATACTCTTGGA ATATTCCGAGTTCACCAATTCGAGAAAGTGGAGCAGTTTTGCCTTACTAGCCCAAATGATAATGCATCATGGGAAATGCATGAGGAGATGCTAAAAAACT CTGAAGATTTCTACAAAGCACTAAACCTTCCATATCAAGTTGTTTCCATTGTATCTGGTGCTTTGAATGATGCTGCGGCAAAGAAGTATGATTTGGAAGC ATGGTTTCCAGCATCTCAAACTTATCGAGAGCTAGTGTCCTGTTCAAACTGCACAGACTATCAATCCAGAAAATTAGAAACTCGATTCGGGCAGAAGAAG AGCAATGAACAATTGAAGCAATATGTCCATATGTTGAATTCTACTCTCACAGCTACCGAGAGGACCATATGCTGCATACTAGAGAACTACCAGAAGGAGG ATGGTGTAGAGATACCGGAAGTCCTCATTCCATTCATGGGTGGAAAAACTTTCCTACCTTTCAAGACCAAACCAGTTGCTGAAGCCAAAGGGAAGAAATC AAAGGCCTAATTGCATTATATTTAGTCTGAATGATGATATTTATGAAAAGAGTTAGTTCACAATTGAAGGGCATTGAAACGTGTTCAATATAATGGAGCT GCATCTACATTGACTTCAATTACAAACTTTTTTGAAAAGAGGAAAACTTTCTGGAAAATTGGTACCAAATTATTCAATCATGTTTTGTAGTACATTTTGC AGTCAATCTTGTGTTTTGTTCTTAACTGAGGACCACTCAAGTTCATAGGTTTTTAAGCAGCCTTTGTTATGAATTTGTTGTTTTTTCTACCTTTTATTTA AAGAAACTCTAAACAAATGTATTTGTTTTTAAAATAATGTGTGGTTTCATCTTCTATTAATATCTAGCTTGGTTTATTTTACATATGATTATAGACATTT AGGCAGTGTTTGGTATAAGTGCAACAACGAAATGGAACAAAATGCAAATG BLAST |
| Tissue | flowers |
| Gene name | LI_gene_65456; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_172499
| Blastp | Serine--tRNA ligase, cytoplasmic from Arabidopsis with 86.64% of identity |
|---|---|
| Blastx | Serine--tRNA ligase, cytoplasmic from Arabidopsis with 79% of identity |
| Eggnog | Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec) (By similarity)(COG0172) |
| Kegg | Link to kegg annotations (AT5G27470) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019419668.1) |
| Pfam | tRNA synthetase class II core domain (G, H, P, S and T) (PF00587.24) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |