| Id Trinity | FTRINITY_DN57206_c1_g1_i17 |
|---|---|
| Name Transcript | Ll_transcript_54049 |
| Sequence | GATCGACTTCACAATTCAAATTTCAAAACACAAACTCGAACGCTTCCGAGTTGACTCAATGGAACCGAAACCCGAGTCATCACCTACCGAGTCCGACTCA TCTCGAGGACGATCCACCACTCGCCCTAGGCTCTTCATCAAGGAAATGGTGATGCGCAATTTCAAATCCTACGCTGGCGAACAACGCGTTGGTCCATTCC ACAAGAGTTTTTCGGCTGTGGTTGGACCTAACGGGGGTGGAAAGAGTAATGTGATTGATGCGATGTTGTTTGTGTTCGGGAAGAGAGCGAAGCAGATGAG GCTGAATAAAGTTTCTGAGCTTATTCACAATTCCACCAATCATCAGAATTTGGACAGTGCTGGTGTTTCCGTTCATTTCCAGGAGATTGTTGATTTGGAA GATGGAACATATGAGGCTGTTCCAGGGAGTGATTTTGTGATTACCAGGGTGGCTTTCCGGGATAACTCATCTAAGTATTACATTAATGATCGTTCGAGTA ACTTTACTGAAGTTACCAAGAAACTGAAAGGGAAAGGTGTTGACCTTGATAATAACAGGTTTCTGATCCTTCAGGGTGAAGTTGAGCAGATTTCACTCAT GAAGCCAAAATCTCAAGGACCTCATGATGAAGGTTTTTTAGAATATCTGGAGGACATCATCGGTACTGACAAATATGTTGAAACAATTGATGAATCAAAT AAGCAGTTAGAATCCCTGAATGAGAGAAGATCTGGGGTTGTGCAAATGGTTAAGCTATCTGAGAAAGAAAGGGACAACTTGGAGGATGTAAAGAATGAAG CAGAAGCATTCATGTTGAAAGAGTTATCTCTTTTAAAATGGCAAGAGAAAGCTACAAAGTTGGCTGTTGATGATACAGATGGAAAAATGGTTGAGTTACA AGAGAATGTTTCTACCCTAGAAGAAAATCTGAAGGCTGAAAGGGATAAAATTAAAGAAAGTAAACAAACTCTGAAGGAGCTTGAAACTAAGCACAACAAC TACATGAAAAGACAAGAGGAGCTAGATAATGACATGAGGAAGTGTAAGGAAGAGTTCAAGGAGTTTGAGAGGCAGGATGTCAAGCATCAGGAAGATTATA AACATTTGACTCAGAAGATCAAGAAGCTGGAGGACAAAGTTGAAAAGGATTCAAAAAAACTTGAAGCCCTTGTAAAGGAGGGTGAGGACTCAACTGATCT AATACCGAAACTTGAGGATGATATCCCAAAACTGCAGAAATTATTGATCGAAGAGGAGAGGTTGTTAGAAGAAATCATTGAGACGTCCAAAGTCGAAACT GAAAAATACCGCTCTGAGCTTTCTAGAGTCCGTGCTGAGCTTGAACCTTGGGAAAAACAATTGATCGAGCACAAGGGAAAACTTGATGTTTCATCTAATG AGAATAAGCTTCTAAATGAAAAGCATGAAGCTGCTTGTGAAGCTTTTAAAGATGCTCAAAAGCAGATGAAAAGCATATCAGAAACAATCAAATCAAAAAC CGCCAGCATTTCTCAAATTAAGAGTGACATTGAAAAGAGCAAGTCCGAAGCATCAAAAGCTCACCAAGTGGAAAAAGACTGTATCATAGAACAAGATGAA CTCATTCCTCTTGAACAAGGTGCTAGACAGAAGGTTGCAGAGCTGAAATCTGTTCTAGATTCTGAGAAGAGTCATGGATCAGTTCTAAAAGCGATCTTGA AAGCTAAGGAAACCAAACAGATAGAAGGAATATATGGCCGTATGGGTGATTTAGGTGCTATTGATGCAAAGTACGATGTTGCGATTTCAACAGCATGTTC TGGACTTGATTATATTGTGGTTGAAACAACAAATGCAGCACAAGCCTGCGTTGAGCTACTTCGTAGAGAGAATCTTGGTGTTGCTACTTTCATGATATTG GAGAAGCAAGTTGATCTTCTTCCAATGTTGAAAAAAAAAGTAAGCCCTCCAGAGGGGGGTCCACGTCTTTTTGATTTAGTTAAAGTTCAAGATGAAAGAA TGAAGCTTGCTTTCCTTGCTGCACTTAGAAACACAGTTGTCGCTAAGGATCTTGACCAGGTCAGTTATGCTTTTGTAGCGGAATACTCTATTTTGATAAT AAATATCCAGGGCCATTAATCATTATACTGTAATTACCAGTTACTCGCAATGATATAAAATATATAGCTTAGGTTTTAGACAGCACATTTTTAACTTTTC ATATCAGTGAAGGAGACCACTGAATACCAACCTTTTTTTCTACCTCCGCCATATTTTAGGCCACACATATAGCATATGGTGGAAACAATGAATTTGGACG TGTTTTTTACTCTTGATGATGCACTCTTTGAAAAATCTGGAAAGATGAGTGGTGGGGGTGGTAAGCCCCATGATGGGAAGAGGGGGACATCTATTCGGCA ATAATCCCATCCTTGGTCCTCAGTTAGGTGATGAATGTTAAATCTCTTTCTGTTGATCTGAAGATAATTCTTCAGAGACATACAGAAATATTCATCATCA TGAACTTATCAGGAGGAGGAAGAAGCTATCGAGAGAAGAAAGAAATATTAGGGTTTGTAATGTGAGCGAAGCCAGAGACTGTGTGAAGAACCCTACATTT GTATATAGACATACACATATATTTGACATCACGTTCTGCCTTGCACGGGAGTAATAATGTTTGTTTTAATAGAGCATTGCAACCGGAGTAATAGTTTGTT TTAGTAGAGTAAAGAAAATAATTAAATCCATTATGGTGGCCTGAGATCTATCTTTTGTCTGCCCATGTCTAGTACCCTTTAATTTTTTATTTAGCTAAAA AGCATTCCATCCCATGGCATGGTTTCTTTGTTTGATATGGTAGAGTTGAATCTTGAAATCAAGTTAACATTGCAATGCAATTCCTTCTCTCATGGTTTGG ACTGGAGGTAATGTCTAATCCAATTGTGCAACCATAAAATCACCTTTCTTATATTAATTAATGCAGTTCAATTATAAAATTTGCTGAGCAATGCCTAAAT CCAGAAATGAGAGCATCAATTTTTAGTCCTCGGCTTATGGAATTGATGCATTGCATTTTATTCATTTCCATCTTGCACAATTTTAATTTAGCTTCTCTAC CTCTGACCATCAGGGGCTGGGAAAGCATATGCATGCAGTAGCTATGGCTACCACAAAAGTTATTAAAAGTGAATTTTTCACGAGTAATTTTTTATGATTT TTTATGACTTCCCCCTTGAATAAAGTATCATTCTTGGTTTCCTTATTGAAAATGTTCTATCTCTGTCCTAGCCTTCATATTTATTTCAAATGCCTTTCTT TTAGACATTAAATTTAGATGTGTTGTTTTTGCGGCCTTCTGGATTTATTTAAGTAGTACTGTGTGTCCTCGGAAGATGGATGTTCTAAAAGTTAATGCAT TTATAGCTTTATTATTCTAATTATCTACTGCACCATTTTGGCTATACTTTTAGTCAAGTAACTTGCATTTTATTATAAATAAAACTAAGCTGGAATTGCA CTTGGCCTTATTTGGTTGTGTATGACAATATAAATAAAAGTGATTTAAAATGTGCTTTTATTTGAAGGTGTGAGATTAGGATTCCTATTATATTTTAACA ATTTTGGATTTATTTTTAAATCATGTCTCTGTACATGGTTGTCTACCTAGGTTTCACATGTATTACTAACGTAATGTACACAAAACTCAGACTTTTACTA TTGTAGTCATTATTTGCATATTCACTTGGAAATTAATAGGAACTGAACTACTATCATTCTGGAAGATTTATGTTTGGATCTCTCTCTTTTTTTAACAATT CATGACTACCTTGTTCCTCTTAGTGCTAATTGCATTTGCTCAATTAATATTGAAATTCATTGTAGTATATTAGTTGGTTGAATACCACAATATAATTTAA TAACAATGAATGTAGTGTTGTTATGGAGGAGCAATTCATACTTAGAGTTCCACCAAGTGTTGCAGAGCGAATAGAGCGTCTTCTTAACAACAACAACATT AATAATAGTGATGCTCCATCTTCTTCATCTGAGGACAACAAGTCATTAGATTTGTCTTTTAGTGAGGATGGCAGAAGTGGTTCCTTCTTGATTGGCAATG AACGATTCCCAGCATCTCTCTTGGACCTTCCTTGTGTCGTTGAATCGTTTAAAACTTATGATGATAGTTCTTTGATTAAAACAGCTGATATTGCTCAGAT GATTATGGTGAGGGAATCTGGGGATCCTGCTCCAGATGTCATTGAGTACAGACATGGCCTTACCCCTCCCATGAGAGATGCTCGAAAGCGTAGATTTCGC AGAGAGCCGGATCTCAATCCTGAGCTTGTCTCCCGTGTTGAGAAAGATCTTCTCAAAATCATGGCTAGAGGAAATGTCGACAATCTTGATGTGGAAGTAG CTGATCAAGAAGAAGGGGATGAGAATGTTCGAGGTGCTGCTGAGAAACCTGCACCTGCACCAGTCCCAAAACATGATGTTCGGGTGACTCGTACAAATGC TGTGGAGCAAGATAGGAGTGACTCTGATGAATCCGATGACTCAGTTTGAATGAAATATGCACAAAGAATACTTATATTGCTATGTTGAAAGTCTACAAGA ATATGCATAAAGTATATTTGGCTTTTAGAATCACATCCACCATCTTATAGTCTGATACATGGATTTCAATTGCATTTCATTTGTCGAATGGTTAATTGCA TTTTACACCGTCTATGATCATTGAGGTCCTTATTTTCTTGAAGCCAATTTTGCTTCCATTTATAACCCCCTTCTTCTTTATCAGCTATATGCTTAAAAAA CACATTTTTTGACCTTTTCACATGTATGACGTAATTTTATCTTAGGCAAAGCAACAATTACTTCATTTTTAATCAATTTATTGGAACGATCCGAGAGTGA GTGTGTGTAATTCTTTTATGTCAAAGTCG BLAST |
| Tissue | flowers |
| Gene name | LI_gene_66718; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_54049
| Blastp | Structural maintenance of chromosomes protein 4 from Arabidopsis with 73.93% of identity |
|---|---|
| Blastx | Structural maintenance of chromosomes protein 4 from Arabidopsis with 73.93% of identity |
| Eggnog | Required for chromosome condensation and partitioning (By similarity)(COG1196) |
| Kegg | Link to kegg annotations (AT5G48600) |
| CantataDB | Link to cantataDB annotations (CNT0001234) |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019432441.1) |
| Pfam | RecF/RecN/SMC N terminal domain (PF02463.18) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |