| Id Trinity | FTRINITY_DN57236_c0_g4_i3 |
|---|---|
| Name Transcript | Ll_transcript_54001 |
| Sequence | TAAAAAACAATTATCAAATAATCCCCCCTCCCATCATCACCCATGTAAAGGTTCAGTGGCACAACCGGAAGCTGCTGAATAGCGTCGATGTTTTTCAGTA TTTGATGAAATCAAAATAACAACAAACCTTCCATTATTTTTCCCTCTTCCTTATTTCCCCTCAACCAAACAAAAGAAAAAAAAATGGAAAACTCCCTCCA ATTTCTCCCTCCCCCTCCTCCACCACCCTCCTCCACCATCTCCACCGTCCTTGAATCCCTCAACAACCTCCTTTCTTTCCAAATTCCACTCCCTCCCAAA CCCTTTAACTCCAATCTCATCCAATGTCCTTTCAACCCAACCCACCGTATGCCCCCTTCTTCCCTCTTCCTCCACCACCTCCGCTGCCCTTCCTCCCCTC GCCTCATCCCCGATCTCCACCGTCTCCTCCACTCTCTCACCTACCCCACCACCCTCAACACCACCACCAACCATTCCCACATTCCTCTCACTTTCTCTCT TGATTTCCTTTCCAATTTCTTCTATAATAACTGTCCTGCAGCTGTTACTCTCTCTGACCCACAAAATGTTAACACATCAATCACACTTCCCAGGGTTCTA TCTAATGAGTGTGTTGATTCTCGTGATTCTCAGATTGTTAAGTTGAATTATGAGACACTTTACACTTCAATACTGCCTTCCCATTACTGCGCTATTTCGC GCGAAATTGAGTCGTGGAATGATTTTCCAAATGCCTATTCTAACAAGGTTCTTTCTGCAATTTCTGGTATTGGAATTGCAAAGGAGTGTGATTTAAGGAA TTGGGTAATTGTGAATTCACCGCGATATGGTGTTGTTATTGATACACCTATGCAGCAGCATATATTCTTGTTATGTTGTTTATGCTTCAAGTCAATTTCA AGAGAAGCGTTTGTTTCTAAGGAGAAGCAGTGTTTGCAGTTGGATTGTCCCATTTTGAATCAGGCATTAACGTGGCTGGTATCTCAAGTTTCGATCTTGT ATGGCACGATCAATGGAAAGCTTTTTGTTCTTAATTTCATGAAAAATTGTATTTTGGCTGGTGTATCGGGTTTGTTGTTGTTTCAGCCTCAGAATTCTGA TACCAACAATGTTGGAATGAAGGATGCAAAGCCTGATGCACACCCTGAAGAGAAAACAAATTGGATTGTGAACAACAAAGTTTTTCTGTCACAAGTTGCA GCAGCTGTTGCAGCATTGCATGAACGATCCTTGCTTGAACGTAAAATTAAGGAATTTTGGTTTTCTCAGCAGCCTAGTAATTATCAAAGGGCTTCTGAGC ATTATTATTTGTCTGAGAGAGCTAATGAAGAGCGGAAAAAGCGTGCTGATTTTAGACCTCTGATTGATCATGATGGACTTCATGGGCAGCAATCATCTAA CCAGGAAACATCTAGAGAAAAGACACGGGAGGAATTGCTAGCTGAAGAAAGGGATTACAAACGTCGAAGAATGTCTTATCGTGGCAAGAAGATGAAGACA TCAGCCGTACAGGTGATGAGGGATGTGATAGAGGAATACATGGAGAGAATCACGCAGGTTGGTGGAGATGAGAGCCCTTTTTCTAAAGAGAGTGGATTGC ATCCATGTAAACCTCCGTCCAGCCATGACATTCCCATGGAAGCTAATTATTCAAGAAAAGACAATCATGACTCACCTGCAGTGAGAATTAGTAACCCGAG TTATAATGGGAAACATTCACGCACTAACTATTGGGACAAAAGTAAACCTGTTGAGGATGCGTTTTCTAGAAATTACAAACAACGCAGACAAGAACATTAC AGAAGCCATGATTATGCAGAAGATCAAATGAATACTGGTCAAGGAAAATATCATAGAGATCATGCTTCTAAAAGCCCTGAAAGACACAGAACTCATAGTA GACCACACGAGCGTAGCTCTCATCACTCAAGTAGAAAGAAGTATGATCACTTGTCAGGAACCAAGGATAGGCAGCAAAGCGACTCACACAGGAATGACAT TTCAGATTCTGTTCTTAAGAATGCATTTTCAGATAGATACATTCCTTCAGATTCTCATGATGTTCGTGATGATGATACCTTCTCCCATGCGAAATTTAAT AAGCCAGATAAATTGAAGGAACGCCATTATTAATGGCGAGAAATTTGAAAGCACTACATTTGCAGTGGTGCAGTATTTACTTATCAAGATGCAGGGATTT TATCAATGTATCCTCCTTTGTATCCTTAAGTGCGTATAATTAAGATTTCCTTGTTTTTTTCTGTTCTTTTCTCTCTCAAGAATAAGCAACAAAATATAGA TGTGGCAACCTCAATAAAATCTACATTACTAAAGTTTTCTAATTTATTCTTTGTTTTACAGTTTTACTTTTCTAATTTTTGGATCATGTCTTAAGAACCT TGGGAGAACCACCCCACAAAAGCTAGCTTTTGTAGTTAGAGAGCCCAAGGCCTTATAAAACCGACACTAGAATCCCATACTTACATTGTGGGACTCAAGT CCCATACTTTTCAATTGGATTCTAACATTATGTTATGCGTGTTTGGAGAAATGAACATGTTATTCTCTAGTTTGCATTATTGAATCCTATAACTACAGAG AAAGCAACTATGTGGGGTCCTATTTCGTGCGGAGGCTTTAGGTTATTAAGCTGAAGCACATGAATGTTCTATGTATCTGAGTTTTGGTGTGTCCATATTC CATAAGCAGAGATTGGATTTGAACTCATTTGAAATTCAAGTTTACAAATTCGCTGTTGTGTTCTCTTCCAATTACTTGCTCCTAAACTTTGCTTAGATTA GGCACATGCTAAGATTGATCTAGTCATCAAGCTGTCATTATTAAGCCACAGATTTTTTGAAAGAAAATTTAGTGATTTTTTAAGCACTATCTGATATCCA AATCTTTTGTTTTTGGTATAGTACATTTGGATCCATGTAACCGATTCCACCTAATAGAAAAGGCTTTGGTTTTTGTTGTTGTAAAATGTTTTTGACTTGC TAATTTATAGCATTTCAATTACTACATGGGCTCTTTCTGCTTTTTGTTAAACTTTGCTGCTTCAGCATGACGGATTCTTCAATTGGCTTCACCTAGTTTC TTCATAATTTCATAGTAAGAGAGACCCATCTGTGCTGCATCAAGGTCAGATAAGTAAATCCTGCTGGTAAATGTTTGTATGTGAGAAACTAGAAGATAAT AATAATTCAAAGAGAAGAGTTTGTGTGAGAGATAATATAATTATGGGCATAAGTCCAAAGTCATGTGACAGTATTAAATTTTTTGATTCAATTGTGTTAT TTGCTTGCCAGGAGAAACGAACATGTTTTCTCTACTGTTTTTTTATATGAATCATTTAACTACTGCGAGAGCAATTATGTAGGCTCTTATTCTTTGTGGA GTCTTTTGGGCTCATTTGGTGGACAAGATAAGAGAGACGTGATAGGATAGTCTGTGATATCTTGTTGCTGTCTAGAGTTTGGTGAACTAGCAGGATAGGA TATGGTTATCTTGTTGGCCTATCCTATTTTGTTCAATTAGTGTATTTTTTTATCTTTGGGGAAGGTGAGATAGAAATGACTCAAATGAGCACGACACGAT AGTGCAGTGTTTTTCTATCACACCCTCACACATGAACACCAATGTCAGTACTACCACTGCCGCCACTGCCACCACATCAACGTTTTTCTATCATACCCTC ACACTAAACACTGAACATGATAAGAGCTTATCCTGCTCTCTTTATTTTTTGGTGCCTCCCTAAGCAGCAATTGGATTTGAACTGATTGGAAGTTCAATAG AACTTCCTGTTATGGGCATATTTAGCCACACATTTATTGCAAGAGGAGGGTTAACTATGGGCTTAAGTCCAAATTTACTTGCCATTATTTCTGTTTTGCT TCCACTGAAAGTAGCTAATATACCTTTGCTCTGGCTGTGCTTATCACTGCAGGTGGCAACTATGATGACTGTTGAGGCCAAGGTTCAATGGGAGACAATA CAAAACCAAATTATTTTTTATGTCACTAGGTGTTTTTGAAGTGTTCTCTCTCAGCTTTTAAGATTATATTTGATTGTATTACTTTATTTGACTTTTTTTG TTTGCTTTGAAACATACAAAATCTTGTGGTGTTTGCTTCGTACTAGAACTTTGTTTTTTGGTTATGTCCTTTATATGTTACAAACCATATGTTGCAAACA AGACTTGAAGGCATTTGCCTTTCATATGTTACAAATCAATCCGCAGTAACAGTAATTTTTAGATGTAATGTAATGACATTTTTATCTTTAAATGTAAAGT TAAA BLAST |
| Tissue | flowers |
| Gene name | LI_gene_66998; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_54001
| Blastp | U11/U12 small nuclear ribonucleoprotein 48 kDa protein from Arabidopsis with 35.85% of identity |
|---|---|
| Blastx | U11/U12 small nuclear ribonucleoprotein 48 kDa protein from Arabidopsis with 41.44% of identity |
| Eggnog | NA(ENOG4111MIF) |
| Kegg | Link to kegg annotations (AT3G04160) |
| CantataDB | Link to cantataDB annotations (CNT0000795) |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019452875.1) |
| Pfam | U11-48K-like CHHC zinc finger (PF05253.11) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |