Ll_transcript_53643

• Id Trinity: FTRINITY_DN57238_c5_g1_i12
• Name Transcript: Ll_transcript_53643
• Sequence: CAACTATATCACATCAGTTAAAAAATTAAACATTCATGATTTTATTTATTTTTTCTTCATTCTGATAGACATGGTACATGGTTTGAAACAACAAATCTCC ATCCCTTTGTTTCTCCTAACCCGGTGTATATTCCTTATGTTGATGTTTTAACATGTATTTCCATGTGTAATTCATAAGAAGATTAAGCTTTGTAATCAAA GTTAGTTGTTTTGATAGTTAGAAGTTAGTTGGTGAAAGTTACTATAAGTAGAAACTTTGTATTTGAAAGTTAGTTGATTCATTGACAAAAATAGAAAGTA TTGCAATTCATTCATTCTACATTTTCTTCTCCATTTTCATTCTCTCTTCCACTCTCATTTTCAACTCTCTGCAACACTCAATCTCATTCTCCCCTCACTG CCATTTTTCTTCTTCATTTCTTATTCATTCTGTTGTGCAACAGTGGAGGCATAAGGCATTGCCCTCCAACAGTGGTATCTAGAGCAGCAAGAACTGGGAT TTCTTTGAGCAACATTCCTCACAGAAGCAACACCTAAGATTCAAGGATTGAAGATTAGGAGGAAAGGGGTAGCGTGAAGAAGAAGCAAGGGATGGCTACA TCACAAGGTTTAGCAATGAATCTTCCTATTCTAGATGGCAGAAATTACAACCATTGGTGTGTGCAAATGAAAGCAATTTTCACATTCCAAGAATGCATAG ATGTGGTGAAGGCAGGGATACAAGAAAGGGATGAAAATTCAGTGGAGTTTAGAGAAGCAATGAAGAGAGACAGCAAGGCCATTTTTCTGATCCATCAGTG TGTGGACACTGCCAATTTTGAGAAGATTTCAAGTGCTTCTTCATCAAAGGAAGCATGGGAAATCTTGGAGCAATGCTACACAGGAAACTTAAAGATCAAG AAAGTAAAACTCCAAACACTGAGAAGGCAGTATGAGTTGCTGCAAATGGATGAGGATGAAGAGATTGGAGACTATCTCACAAGAATCAGAACTTTAACCA ATTTGATGAAAGGTTGTGGCAAAAAGATTTCTGAAAAATCCATTGTTGAAAAGGTGCTGAGAACACTCTCTTCTAGATTTGATAACATAGTAGTAGCTAT TGAAGAATCCAAGGACATTGAGGCACTCAAGGTGGAAGAGCTACAAAGCTCCTTGGAAGCACATGAACAAAGGTTCATAGAAAGGCAAGCCAATAGACAG AATCAGCAGGCCTTAAGTGCACAATTCAGAGTCAAGAAAGGCTCTAGCCAAGTGATCAAATCTAAGGAGAAGGGTAAGTGGAAGGTGGATGCAGAAAGTG TGAGGTCAAAGGGCTCAAAATTTCAGAAGACTAGCACATGTAAAACTAGTCAAGAAAGTGAGGCTGCAAGAAGCAAGAAAAGCACAACTCAGTTGGTTGG AGGAAAGAAGAAAGATAAGAGCAAGATTCAATGTTTCAATTGTAGAAATTGGGGACATTATGCTTCTGAGTGTAAGGCAAAAAAGAGTGTCAATGCCAAA GAAGAAGAAGCAAGGCTTGCAAAGGGTGACACAAGTGAATCAGAAGAAGATGTGTTACTATTAGCATTGAAGGAAAGCTCAGATGATGCACTCTTGATGG TGAGGGAACACTGTGATCAAGGAACCAACACTTGGTACCTTGACACAGGGTGTTCCAACCATATGACAGGGAACAAGGACTGGTTTGAAAGCTTAGACAA CTCAATTCACACCAAGATCAAGTTTGCTGATGACAGTGTGATAAATGCAGAAGGAGTTGGTAGGGTACTCATAAAGAAAAGAGATGGCTCATCCTCATAC ATCAAGGATGTGTTATATGTGCCAAAGATGAAAAGCAATCTGTTGAGCTTAGGACAATTGCTTGAAAAGGGCTACATCATGAGGATGGAAGATAAGCTGT TGAAGGTGTTCAACAATAAGGGATCACTAATCTTGAAGGCTCCACTGTCACAAAACAGAACCTTCAAGATTGGAATTCAAAAAGGAAATCATCAATGCTT GGAGTCTGTCATTGATGAGAATTGGCTATGGCACCAAAGACTAGGCCATCTTAACTTCAAAAGTTTGGAGCATCTGAGTAAAGATGGACTAGTGGATGGA TTGCCAATGATAAGAACACCTACAAGTCTATGTGAGGAGTGCATCACAAGCAAACAAACCAGAAATAGCTTCAGTACTAACATACCTACAAAATCCACCA AGCACCTGGAAATTGTGTATACTGATGTGTGTGGTCCTTTTGAGGTTGATTCACTTGGAGGTAGCAAGTATTTTCTGACTTTCAAGGATGACTTCACCAG GAAGCTATGGGTTTATCTGTTAAAGAAGAAGAGTGAAGTGTTTAGTAAGTTCAAGAGCTTCAAAGCATTGGTGGAAAATCAGTGTGGCAGAAAGTTGAGC TTGCTAAGAAGTGATGGTGGAGGAGAGTACACTTCTCATGAATTTCATGAATTCTGTGAAACAGAAGGAGTGACTCATGAGATAATTGCACCATATACTC CTCAACACAATGGAGCAGCTGAGAGGGTGAATAGGACAATCTTGGATATGGCAAGAAGCATGCTAAAAACCAAGAGACTTCCTAAGAATCTTTGGGCAGA GGCAGTCTCAACAGCAGCCTATATTCTGAACAGATGTCCAACAAAGAGATTGAAGGACAAGACACCAGAAGAAGCCTGGACAGGACTCAAACCAAGCATC AAACATCTGAGAGTTTTTGGTTCTGTATGTTACAAGCATACACCTGACTTCAAGAGACAAAAACTTGATGACAAGGGAGTGAAGCTAGTGCTGCTTGGTT ATCATTCTTCAGGTGCTTACAAAGTGCTGGACCCTGAGACAAAAGTCATATCATTCAGCAGGGACCTCAAGTTTGATGAGACTCAAGTTTGGGACTGGAC AGCACAAGTAAGGGCAGCCTCAATCAGACAAGTTGTGATGCCTATTGTAGAGAGTCAAAATTCAGAAGATTCAAATGCAATCAGTGAATCCAATGCAAGG GTAACTGAGAGACCTCAAAGGCAAAGAAACTTGCCCTTGAGACTCAGAGACTATGAGGTATTTGAAGATTCAGAAATTACTCAAGAAGGAGATCTTGTGC ACATGGCATTGCTGGCTGAAGTTGAACCTATATCATTTGATGAAGCAGTGAAAGATGTCTGCTGGATTGAGGCTATGAAAGAGGAAATCAGTTCAATTGA GAAGAATTGTACTTGGCAACTTACTACACTTCCAAAGGGTAAGAAAGCAATAGCTGTCAAGTGGGTTTATAAGGTGAAGTTGAGGCCAGATGGAACAATT TCAAAGTACAAGGCAAGATTGGTTGCAAAAGGGTTCTTGCAGAAACCAGGCTTGGACTTTGATGAAGTGTATGCACCTGTGGCCAGAATGGAAACAGTTA GGCTTGTGATAGCAATTGCAAGTGCAAAAGGGTGGCCTATTTGTCAAATGGATGTGAAATCAGCATTCTTGAATGGTCCATTAGACAAAGAAGTTTTTGT TAAACAACCACCTGGCTTTGAAGTTGCAGATCAGACTCAAAAGGTGTATAAGTTGCAGAAGGCACTCTATGGCTTGAAACAAGCACCCAGGGCCTGGAAC AGAAGGATAGATAGCTTCCTTACTCAACTAGGCTTCTCAAAATGTATCATTGAGCATGGAATCTATACTAAAGACATAGGTTCAGAAACACAAATCATCA TATGCTTATATGTTGATGATTTGTTAATAACAGGCAGTATGGAGAGTGAGATTGAATGGCTCAAATCAAAACTAAATCTTGAATTTGAGATGTCTGACCT AGGAGCATTGGCATACTTCTTAGGGATTGAATTTGCTAGAACAGAAGCAGGGATTTTGATGCATCAAAGGAAGTACATATCTGATGTACTTGGCAGGTTT GAAATGCTTGAATGCAATCCAGCCTCAACACCAGTTGAGGTTGGACACAATCTAAGCATAAATAATTCAGATGAGCAGTTGATTGAATCAACTCCCTATA GGCAAGTAATTGGATCTCTAAGATACATATGCAACTCTAGACCAGATCTTGCTTTTGGAGTAGGCTTAGTGAGCAGATTCATGGAGAAACCAGCTCACTC TCACATGCAAGCAGTGAAAAGAATACTCAGATACTTGAAGAGCAGCCTAGACTATGGTGTTCTGTTCCCTGCAAACTCAGGAAATCACTCAATCTATGGT TATTCAGATGCTGATTGGAGTGGTGATAGGGATGATAGGAAAAGCACAAGTGGTTACTTGTTCAAGTATGGTGAAGCTGTGGTCAGTTGGTGCTCAAGGA AACAAAACTCAGTGGCATTATCATCTTGTGAAGCTGAATATGTTGCAGCATGCCTAGGAGCTCAGCAAGCACTCTGGTTGCAGACTTTGGGCACTGAGTT GGGTGTGCAGAAGGAGGAGAAGATGGTGCTGTTTGTGGACAACAAGTCAGCAATCAACCTAGCCAAGAATCCAATCTCTCATGGTAGAAGCAAGCACATA GAAACCAAGTACCATTTCTTGAGAGATCAAGTTGAAAAGGGTAACCTTCACTTGGAATTTTGCAGATCTAAAGACCAACAAGCTGACTTGCTTACCAAGG CATTGAAAGGTGAAGCATTTCAAGAACAAAGGAAGCAACTAGGAGTGATAAGCTTAACTAGTATGAATTAGGAGGGAATGTTGATGT
• Tissue: flowers
• Gene name: LI_gene_67013;
• Additional information: details;

Expression of Ll_transcript_53643

FPKM

• FPAB: 0.2
• FPNAB: 0
• LF1: 0.6
• LF2: 0.6
• LF3: 1.1
• LF4: 0.8
• UF1: 0.2
• UF2: 0.6
• UF3: 1.3
• UF4: 0.2

Labels

• FPAB: abscising flower pedicels
• FPNAB   : non-abscising flower pedicels
• LF1: lower flowers stage 1
• LF2: lower flowers stage 2
• LF3: lower flowers stage 3
• LF4: lower flowers stage 4
• UF1: upper flowers stage 1
• UF2: upper flowers stage 2
• UF3: upper flowers stage 3
• UF4: upper flowers stage 4

Annotations of Ll_transcript_53643

• Blastp: Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 33.76% of identity
• Blastx: Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 34.96% of identity
• Eggnog: -
• Kegg: -
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_020987654.1)
• Pfam: gag-polypeptide of LTR copia-type (PF14223.5)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;