| Id Trinity | FTRINITY_DN57238_c5_g1_i6 |
|---|---|
| Name Transcript | Ll_transcript_53633 |
| Sequence | ATTGAATCAGTTCTGAAGGTAGAAAGAAGCATTTAGAGTTTTGGCTTATTAACTGAGATTTTATGATGTGAGAAAAGTGATTAATGTTTGAGTTGCAGAT TGCTGAACTTGGGAGAGCAAGTACAAGAGATAATCCACTACTACGCCCTAACATGAAAGCTATAGTTGTTGCTCTTATGACACTTCTGAAGGATTTGGAG GGATAATTACACCAACTTTTTAACACCTTTTCACATGTTTGTACTGTTGATGTTTTAGCATGCATTTCCATGTGTAATTCATAAGAAGATTAAGCTTTGT AATCAAAGTTAGTTGTTTTGATAGTTAGAAGTTAGTTGGTGAAAGTTACTATAAGTAGAAACTTTGTATTTGAAAGTTAGTTGATTCATTGACAAAAATA GAAAGTATTGCAATTCATTCATTCTACATTTTCTTCTCCATTTTCATTCTCTCTTCCACTCTCATTTTCAACTCTCTGCAACACTCAATCTCATTCTCCC CTCACTGCCATTTTTCTTCTTCATTTCTTATTCATTCTGTTGTGCAACAGTGGAGGCATAAGGCATTGCCCTCCAACAGTGGTATCTAGAGCAGCAAGAA CTGGGATTTCTTTGAGCAACATTCCTCACAGAAGCAACACCTAAGATTCAAGGATTGAAGATTAGGAGGAAAGGGGTAGCGTGAAGAAGAAGCAAGGGAT GGCTACATCACAAGGTTTAGCAATGAATCTTCCTATTCTAGATGGCAGAAATTACAACCATTGGTGTGTGCAAATGAAAGCAATTTTCACATTCCAAGAA TGCATAGATGTGGTGAAGGCAGGGATACAAGAAAGGGATGAAAATTCAGTGGAGTTTAGAGAAGCAATGAAGAGAGACAGCAAGGCCATTTTTCTGATCC ATCAGTGTGTGGACACTGCCAATTTTGAGAAGATTTCAAGTGCTTCTTCATCAAAGGAAGCATGGGAAATCTTGGAGCAATGCTACACAGGAAACTTAAA GATCAAGAAAGTAAAACTCCAAACACTGAGAAGGCAGTATGAGTTGCTGCAAATGGATGAGGATGAAGAGATTGGAGACTATCTCACAAGAATCAGAACT TTAACCAATTTGATGAAAGGTTGTGGCAAAAAGATTTCTGAAAAATCCATTGTTGAAAAGGTGCTGAGAACACTCTCTTCTAGATTTGATAACATAGTAG TAGCTATTGAAGAATCCAAGGACATTGAGGCACTCAAGGTGGAAGAGCTACAAAGCTCCTTGGAAGCACATGAACAAAGGTTCATAGAAAGGCAAGCCAA TAGACAGAATCAGCAGGCCTTAAGTGCACAATTCAGAGTCAAGAAAGGCTCTAGCCAAGTGATCAAATCTAAGGAGAAGGGTAAGTGGAAGGTGGATGCA GAAAGTGTGAGGTCAAAGGGCTCAAAATTTCAGAAGACTAGCACATGTAAAACTAGTCAAGAAAGTGAGGCTGCAAGAAGCAAGAAAAGCACAACTCAGT TGGTTGGAGGAAAGAAGAAAGATAAGAGCAAGATTCAATGTTTCAATTGTAGAAATTGGGGACATTATGCTTCTGAGTGTAAGGCAAAAAAGAGTGTCAA TGCCAAAGAAGAAGAAGCAAGGCTTGCAAAGGGTGACACAAGTGAATCAGAAGAAGATGTGTTACTATTAGCATTGAAGGAAAGCTCAGATGATGCACTC TTGATGGTGAGGGAACACTGTGATCAAGGAACCAACACTTGGTACCTTGACACAGGGTGTTCCAACCATATGACAGGGAACAAGGACTGGTTTGAAAGCT TAGACAACTCAATTCACACCAAGATCAAGTTTGCTGATGACAGTGTGATAAATGCAGAAGGAGTTGGTAGGGTACTCATAAAGAAAAGAGATGGCTCATC CTCATACATCAAGGATGTGTTATATGTGCCAAAGATGAAAAGCAATCTGTTGAGCTTAGGACAATTGCTTGAAAAGGGCTACATCATGAGGATGGAAGAT AAGCTGTTGAAGGTGTTCAACAATAAGGGATCACTAATCTTGAAGGCTCCACTGTCACAAAACAGAACCTTCAAGATTGGAATTCAAAAAGGAAATCATC AATGCTTGGAGTCTGTCATTGATGAGAATTGGCTATGGCACCAAAGACTAGGCCATCTTAACTTCAAAAGTTTGGAGCATCTGAGTAAAGATGGACTAGT GGATGGATTGCCAATGATAAGAACACCTACAAGTCTATGTGAGGAGTGCATCACAAGCAAACAAACCAGAAATAGCTTCAGTACTAACATACCTACAAAA TCCACCAAGCACCTGGAAATTGTGTATACTGATGTGTGTGGTCCTTTTGAGGTTGATTCACTTGGAGGTAGCAAGTATTTTCTGACTTTCAAGGATGACT TCACCAGGAAGCTATGGGTTTATCTGTTAAAGAAGAAGAGTGAAGTGTTTAGTAAGTTCAAGAGCTTCAAAGCATTGGTGGAAAATCAGTGTGGCAGAAA GTTGAGCTTGCTAAGAAGTGATGGTGGAGGAGAGTACACTTCTCATGAATTTCATGAATTCTGTGAAACAGAAGGAGTGACTCATGAGATAATTGCACCA TATACTCCTCAACACAATGGAGCAGCTGAGAGGGTGAATAGGACAATCTTGGATATGGCAAGAAGCATGCTAAAAACCAAGAGACTTCCTAAGAATCTTT GGGCAGAGGCAGTCTCAACAGCAGCCTATATTCTGAACAGATGTCCAACAAAGAGATTGAAGGACAAGACACCAGAAGAAGCCTGGACAGGACTCAAACC AAGCATCAAACATCTGAGAGTTTTTGGTTCTGTATGTTACAAGCATACACCTGACTTCAAGAGACAAAAACTTGATGACAAGGGAGTGAAGCTAGTGCTG CTTGGTTATCATTCTTCAGGTGCTTACAAAGTGCTGGACCCTGAGACAAAAGTCATATCATTCAGCAGGGACCTCAAGTTTGATGAGACTCAAGTTTGGG ACTGGACAGCACAAGTAAGGGCAGCCTCAATCAGACAAGTTGTGATGCCTATTGTAGAGAGTCAAAATTCAGAAGATTCAAATGCAATCAGTGAATCCAA TGCAAGGGTAACTGAGAGACCTCAAAGGCAAAGAAACTTGCCCTTGAGACTCAGAGACTATGAGGTATTTGAAGATTCAGAAATTACTCAAGAAGGAGAT CTTGTGCACATGGCATTGCTGGCTGAAGTTGAACCTATATCATTTGATGAAGCAGTGAAAGATGTCTGCTGGATTGAGGCTATGAAAGAGGAAATCAGTT CAATTGAGAAGAATTGTACTTGGCAACTTACTACACTTCCAAAGGGTAAGAAAGCAATAGCTGTCAAGTGGGTTTATAAGGTGAAGTTGAGGCCAGATGG AACAATTTCAAAGTACAAGGCAAGATTGGTTGCAAAAGGGTTCTTGCAGAAACCAGGCTTGGACTTTGATGAAGTGTATGCACCTGTGGCCAGAATGGAA ACAGTTAGGCTTGTGATAGCAATTGCAAGTGCAAAAGGGTGGCCTATTTGTCAAATGGATGTGAAATCAGCATTCTTGAATGGTCCATTAGACAAAGAAG TTTTTGTTAAACAACCACCTGGCTTTGAAGTTGCAGATCAGACTCAAAAGGTGTATAAGTTGCAGAAGGCACTCTATGGCTTGAAACAAGCACCCAGGGC CTGGAACAGAAGGATAGATAGCTTCCTTACTCAACTAGGCTTCTCAAAATGTATCATTGAGCATGGAATCTATACTAAAGACATAGGTTCAGAAACACAA ATCATCATATGCTTATATGTTGATGATTTGTTAATAACAGGCAGTATGGAGAGTGAGATTGAATGGCTCAAATCAAAACTAAATCTTGAATTTGAGATGT CTGACCTAGGAGCATTGGCATACTTCTTAGGGATTGAATTTGCTAGAACAGAAGCAGGGATTTTGATGCATCAAAGGAAGTACATATCTGATGTACTTGG CAGGTTTGAAATGCTTGAATGCAATCCAGCCTCAACACCAGTTGAGGTTGGACACAATCTAAGCATAAATAATTCAGATGAGCAGTTGATTGAATCAACT CCCTATAGGCAAGTAATTGGATCTCTAAGATACATATGCAACTCTAGACCAGATCTTGCTTTTGGAGTAGGCTTAGTGAGCAGATTCATGGAGAAACCAG CTCACTCTCACATGCAAGCAGTGAAAAGAATACTCAGATACTTGAAGAGCAGCCTAGACTATGGTGTTCTGTTCCCTGCAAACTCAGGAAATCACTCAAT CTATGGTTATTCAGATGCTGATTGGAGTGGTGATAGGGATGATAGGAAAAGCACAAGTGGTTACTTGTTCAAGTATGGTGAAGCTGTGGTCAGTTGGTGC TCAAGGAAACAAAACTCAGTGGCATTATCATCTTGTGAAGCTGAATATGTTGCAGCATGCCTAGGAGCTCAGCAAGCACTCTGGTTGCAGACTTTGGGCA CTGAGTTGGGTGTGCAGAAGGAGGAGAAGATGGTGCTGTTTGTGGACAACAAGTCAGCAATCAACCTAGCCAAGAATCCAATCTCTCATGGTAGAAGCAA GCACATAGAAACCAAGTACCATTTCTTGAGAGATCAAGTTGAAAAGGGTAACCTTCACTTGGAATTTTGCAGATCTAAAGACCAACAAGCTGACTTGCTT ACCAAGGCATTGAAAGGTGAAGCATTTCAAGAACAAAGGAAGCAACTAGGAGTGATAAGCTTAACTAGTATGAATTAGGAGGGAATGTTGATGT BLAST |
| Tissue | flowers |
| Gene name | LI_gene_67013; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_53633
| Blastp | Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 33.76% of identity |
|---|---|
| Blastx | Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 34.96% of identity |
| Eggnog | - |
| Kegg | - |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_020987654.1) |
| Pfam | gag-polypeptide of LTR copia-type (PF14223.5) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |