| Id Trinity | FTRINITY_DN57238_c5_g1_i7 |
|---|---|
| Name Transcript | Ll_transcript_53635 |
| Sequence | CAGGAGGTTAGGCCTTTTAACTTTTCAGAGAGTTGGCTTGTAATGCCATGACTATTTTCAGCTTCATGTTTACATAAGGGTCACCTTCATTCTTAGCCTC ATACCAAAACTTATAGTAAGAATTGAAAGATAGCCATTGGTTCACTGAGCTTAAAACTTGCTTCAATATAAACAGGTCTAGCCCGGGGAGTTGCAGTTGG AATATCTATAGCAGCAACATGTGGACTTGCTTTATTGGTAATTTGTATATATGATAGATACTTCAAGAAGAAGCAAGGAGAAAAAACTAAATTGTCTATA GAAAACTCAATAGGGCTTTCAACTCAAGATGGGTCCAGTGTGCATGCTTCTGGCCTTACAGGCATAATGGTGGCAAAATCATTGGAGTTCTCATATGAAG AACTAGCCAAGGCTACAAATAACTTCAGCTTAGATAATAAAATTGGTCAAGGTGGTTTTGGAGCTGTCTATTATGCAGAACTTAGAGGAGAGAAAACAGC AATTAAGAAGATGGATGTTCAAGCTTCATCAGAATTTCTTGCTGAGTTGAAGGTCTTAACACATGTTCATCACTTGAATTTGGTGCGTTTGATTGGATAT TGTGTTGAGGGATCTCTTTTCCTTGTATATGAATACATTGACAATGGAAACTTAGGCCAATATTTGAATGGTAAAGGGAAGGATCCATTGCCATGGTCTA CAAGGTTGCAAATTGCTCTAGATTCAGCAATAGGTCTTGAATATATTCATGAACACACTGTGCCTTTGTATATCCATCGTGATGTAAAATCTGCAAATAT ATTGATAGACAAAAATTTACGTGGAAAGGTAGCAGATTTTGGCCTAACCAAACTTATTGAAGTTGGAACATCCTCACTTCAGACTCGTCTTGTGGGAACA TTTGGATACATGCCACCAGAGTATGCTCAATATGGTGACATATCTCCAAAAATAGATGTATATGCATTTGGAGTTGTACTTTATGAACTTATTTCTGCAA AGAATGCTGTTCTGAAAACAGGTGAAACAGTTGCTGAATCAAAAGGCCTTGTCAATTTGTTTGAGGAAGCACTTAACCAGATTAATCCATTACAAGCTCT TACCACACTGGTGGACCCTAGGCTTGGAGATAACTATCCAATTGAATCAGTTCTGAAGATTGCTGAACTTGGGAGAGCAAGTACAAGAGATAATCCACTA CTACGCCCTAACATGAAAGCTATAGTTGTTGCTCTTATGACACTTCTGAAGGATTTGGAGGGATAATTACACCAACTTTTTAACACCTTTTCACATGTTT GTACTGTTGATGTTTTAGCATGCATTTCCATGTGTAATTCATAAGAAGATTAAGCTTTGTAATCAAAGTTAGTTGTTTTGATAGTTAGAAGTTAGTTGGT GAAAGTTACTATAAGTAGAAACTTTGTATTTGAAAGTTAGTTGATTCATTGACAAAAATAGAAAGTATTGCAATTCATTCATTCTACATTTTCTTCTCCA TTTTCATTCTCTCTTCCACTCTCATTTTCAACTCTCTGCAACACTCAATCTCATTCTCCCCTCACTGCCATTTTTCTTCTTCATTTCTTATTCATTCTGT TGTGCAACAGTGGAGGCATAAGGCATTGCCCTCCAACAGTGGTATCTAGAGCAGCAAGAACTGGGATTTCTTTGAGCAACATTCCTCACAGAAGCAACAC CTAAGATTCAAGGATTGAAGATTAGGAGGAAAGGGGTAGCGTGAAGAAGAAGCAAGGGATGGCTACATCACAAGGTTTAGCAATGAATCTTCCTATTCTA GATGGCAGAAATTACAACCATTGGTGTGTGCAAATGAAAGCAATTTTCACATTCCAAGAATGCATAGATGTGGTGAAGGCAGGGATACAAGAAAGGGATG AAAATTCAGTGGAGTTTAGAGAAGCAATGAAGAGAGACAGCAAGGCCATTTTTCTGATCCATCAGTGTGTGGACACTGCCAATTTTGAGAAGATTTCAAG TGCTTCTTCATCAAAGGAAGCATGGGAAATCTTGGAGCAATGCTACACAGGAAACTTAAAGATCAAGAAAGTAAAACTCCAAACACTGAGAAGGCAGTAT GAGTTGCTGCAAATGGATGAGGATGAAGAGATTGGAGACTATCTCACAAGAATCAGAACTTTAACCAATTTGATGAAAGGTTGTGGCAAAAAGATTTCTG AAAAATCCATTGTTGAAAAGGTGCTGAGAACACTCTCTTCTAGATTTGATAACATAGTAGTAGCTATTGAAGAATCCAAGGACATTGAGGCACTCAAGGT GGAAGAGCTACAAAGCTCCTTGGAAGCACATGAACAAAGGTTCATAGAAAGGCAAGCCAATAGACAGAATCAGCAGGCCTTAAGTGCACAATTCAGAGTC AAGAAAGGCTCTAGCCAAGTGATCAAATCTAAGGAGAAGGGTAAGTGGAAGGTGGATGCAGAAAGTGTGAGGTCAAAGGGCTCAAAATTTCAGAAGACTA GCACATGTAAAACTAGTCAAGAAAGTGAGGCTGCAAGAAGCAAGAAAAGCACAACTCAGTTGGTTGGAGGAAAGAAGAAAGATAAGAGCAAGATTCAATG TTTCAATTGTAGAAATTGGGGACATTATGCTTCTGAGTGTAAGGCAAAAAAGAGTGTCAATGCCAAAGAAGAAGAAGCAAGGCTTGCAAAGGGTGACACA AGTGAATCAGAAGAAGATGTGTTACTATTAGCATTGAAGGAAAGCTCAGATGATGCACTCTTGATGGTGAGGGAACACTGTGATCAAGGAACCAACACTT GGTACCTTGACACAGGGTGTTCCAACCATATGACAGGGAACAAGGACTGGTTTGAAAGCTTAGACAACTCAATTCACACCAAGATCAAGTTTGCTGATGA CAGTGTGATAAATGCAGAAGGAGTTGGTAGGGTACTCATAAAGAAAAGAGATGGCTCATCCTCATACATCAAGGATGTGTTATATGTGCCAAAGATGAAA AGCAATCTGTTGAGCTTAGGACAATTGCTTGAAAAGGGCTACATCATGAGGATGGAAGATAAGCTGTTGAAGGTGTTCAACAATAAGGGATCACTAATCT TGAAGGCTCCACTGTCACAAAACAGAACCTTCAAGATTGGAATTCAAAAAGGAAATCATCAATGCTTGGAGTCTGTCATTGATGAGAATTGGCTATGGCA CCAAAGACTAGGCCATCTTAACTTCAAAAGTTTGGAGCATCTGAGTAAAGATGGACTAGTGGATGGATTGCCAATGATAAGAACACCTACAAGTCTATGT GAGGAGTGCATCACAAGCAAACAAACCAGAAATAGCTTCAGTACTAACATACCTACAAAATCCACCAAGCACCTGGAAATTGTGTATACTGATGTGTGTG GTCCTTTTGAGGTTGATTCACTTGGAGGTAGCAAGTATTTTCTGACTTTCAAGGATGACTTCACCAGGAAGCTATGGGTTTATCTGTTAAAGAAGAAGAG TGAAGTGTTTAGTAAGTTCAAGAGCTTCAAAGCATTGGTGGAAAATCAGTGTGGCAGAAAGTTGAGCTTGCTAAGAAGTGATGGTGGAGGAGAGTACACT TCTCATGAATTTCATGAATTCTGTGAAACAGAAGGAGTGACTCATGAGATAATTGCACCATATACTCCTCAACACAATGGAGCAGCTGAGAGGGTGAATA GGACAATCTTGGATATGGCAAGAAGCATGCTAAAAACCAAGAGACTTCCTAAGAATCTTTGGGCAGAGGCAGTCTCAACAGCAGCCTATATTCTGAACAG ATGTCCAACAAAGAGATTGAAGGACAAGACACCAGAAGAAGCCTGGACAGGACTCAAACCAAGCATCAAACATCTGAGAGTTTTTGGTTCTGTATGTTAC AAGCATACACCTGACTTCAAGAGACAAAAACTTGATGACAAGGGAGTGAAGCTAGTGCTGCTTGGTTATCATTCTTCAGGTGCTTACAAAGTGCTGGACC CTGAGACAAAAGTCATATCATTCAGCAGGGACCTCAAGTTTGATGAGACTCAAGTTTGGGACTGGACAGCACAAGTAAGGGCAGCCTCAATCAGACAAGT TGTGATGCCTATTGTAGAGAGTCAAAATTCAGAAGATTCAAATGCAATCAGTGAATCCAATGCAAGGGTAACTGAGAGACCTCAAAGGCAAAGAAACTTG CCCTTGAGACTCAGAGACTATGAGGTATTTGAAGATTCAGAAATTACTCAAGAAGGAGATCTTGTGCACATGGCATTGCTGGCTGAAGTTGAACCTATAT CATTTGATGAAGCAGTGAAAGATGTCTGCTGGATTGAGGCTATGAAAGAGGAAATCAGTTCAATTGAGAAGAATTGTACTTGGCAACTTACTACACTTCC AAAGGGTAAGAAAGCAATAGCTGTCAAGTGGGTTTATAAGGTGAAGTTGAGGCCAGATGGAACAATTTCAAAGTACAAGGCAAGATTGGTTGCAAAAGGG TTCTTGCAGAAACCAGGCTTGGACTTTGATGAAGTGTATGCACCTGTGGCCAGAATGGAAACAGTTAGGCTTGTGATAGCAATTGCAAGTGCAAAAGGGT GGCCTATTTGTCAAATGGATGTGAAATCAGCATTCTTGAATGGTCCATTAGACAAAGAAGTTTTTGTTAAACAACCACCTGGCTTTGAAGTTGCAGATCA GACTCAAAAGGTGTATAAGTTGCAGAAGGCACTCTATGGCTTGAAACAAGCACCCAGGGCCTGGAACAGAAGGATAGATAGCTTCCTTACTCAACTAGGC TTCTCAAAATGTATCATTGAGCATGGAATCTATACTAAAGACATAGGTTCAGAAACACAAATCATCATATGCTTATATGTTGATGATTTGTTAATAACAG GCAGTATGGAGAGTGAGATTGAATGGCTCAAATCAAAACTAAATCTTGAATTTGAGATGTCTGACCTAGGAGCATTGGCATACTTCTTAGGGATTGAATT TGCTAGAACAGAAGCAGGGATTTTGATGCATCAAAGGAAGTACATATCTGATGTACTTGGCAGGTTTGAAATGCTTGAATGCAATCCAGCCTCAACACCA GTTGAGGTTGGACACAATCTAAGCATAAATAATTCAGATGAGCAGTTGATTGAATCAACTCCCTATAGGCAAGTAATTGGATCTCTAAGATACATATGCA ACTCTAGACCAGATCTTGCTTTTGGAGTAGGCTTAGTGAGCAGATTCATGGAGAAACCAGCTCACTCTCACATGCAAGCAGTGAAAAGAATACTCAGATA CTTGAAGAGCAGCCTAGACTATGGTGTTCTGTTCCCTGCAAACTCAGGAAATCACTCAATCTATGGTTATTCAGATGCTGATTGGAGTGGTGATAGGGAT GATAGGAAAAGCACAAGTGGTTACTTGTTCAAGTATGGTGAAGCTGTGGTCAGTTGGTGCTCAAGGAAACAAAACTCAGTGGCATTATCATCTTGTGAAG CTGAATATGTTGCAGCATGCCTAGGAGCTCAGCAAGCACTCTGGTTGCAGACTTTGGGCACTGAGTTGGGTGTGCAGAAGGAGGAGAAGATGGTGCTGTT TGTGGACAACAAGTCAGCAATCAACCTAGCCAAGAATCCAATCTCTCATGGTAGAAGCAAGCACATAGAAACCAAGTACCATTTCTTGAGAGATCAAGTT GAAAAGGGTAACCTTCACTTGGAATTTTGCAGATCTAAAGACCAACAAGCTGACTTGCTTACCAAGGCATTGAAAGGTGAAGCATTTCAAGAACAAAGGA AGCAACTAGGAGTGATAAGCTTAACTAGTATGAATTAGGAGGGAATGTTGATGT BLAST |
| Tissue | flowers |
| Gene name | LI_gene_67013; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_53635
| Blastp | Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 33.76% of identity |
|---|---|
| Blastx | Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 34.96% of identity |
| Eggnog | - |
| Kegg | - |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_020987654.1) |
| Pfam | gag-polypeptide of LTR copia-type (PF14223.5) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |