Ll_transcript_52988

• Id Trinity: FTRINITY_DN57245_c3_g1_i5
• Name Transcript: Ll_transcript_52988
• Sequence: CTTCCTTCAAATATGCGATCCAGACAATGGTCACACAAATAAGACAAAACGCTCCACAGTAGCGCGTGGAAGAACAGAATCATCAAATTCTCACTCTCTT CTATTCTGCCATTTTCTCTCTCTAGACCTGGTCGCACCACCACCACCATGACCCCATCTCCTTGAAATATATAATAATACCCCATTGCTGCATAACAAAC ACATCGAAATCCAATGGGCGAGTTGACTCAGACAGAGGTGTACTCTTCATCGCCGTCGAACTCGCCACGAACTCAGCAACTATGGAAGTCAATGTTGAGC TGGTTGACTTTCTTCTTTAAGATTATTAGAGCACTCGTTCACTACCCTTTACTCTCTTTCTCTTCTTCTAATACATCCTTCAAGCCTCTACCTTCAATTG AACTTCACGGCCACCATGATTCCGCCGCCGCATCCCTCGAAATCACCGATGCCGATTCCGGTCACCACCCTTCCCATAAACTCATGGTAGTACTTGATTT GGATGAAACACTGATATGTGCATATGAGACATCAAGTCTGCCAGCTACACTGCGTACTCAAGCTATCGAAGCTGGTTTGAATTGGTTTGAGTTTGAATGT ATGCCTTCGGACAAGGTATGTTACTTTATAACTTGTATGTATTCCTTGTCCAGAGCTAGAATATTTAGTCCTCACCTTGGCATGTTGGACTTTTAAGGAA GGAGAAGGGAAACCTAAAATCAATTATGTTACAGTCTTTGAACGTCCTGGGTTGAAAGAATTCATAAGGCAACTTAGTGAATTTGCGGACTTGGTGCTAT TTACGGCTGGTCTTGAAGGTTATGCTAGACCCCTTGTTGACAGAATAGACATAGAAAATCGGTTCAGTCTTCGACTTTATCGGCCTTCAACAACCAGCAC GTAAGTGCTTCTGCCTCATTTAAGTCCCACTAATCTTTCTTGTCGCTCCTTTATTGCTAGTAGCCAGGCAACTAGTGTGAAATATTTTTTATAACTAATT TGATCTTTCTTTCTGGTGTTTTGTTCCTTGTTCTTTTGATACCAACCTATGTCTTCATGTTCTTTCCCTGTCTTCTTTACAGCCTTGAGTGGAGATCATT TTATCTTGGCAACAACGATAAAACACCTATAGATACTGCTATTTTCTCAATAATATGAAATTTGACAAATATGAATACTTTATTACATTTTAAATTGTTT AGTTATCTATGTTTTTGAGCTTGAAGTTCAGAGTGGAGTCTTCCAAACGTAGCTGTACAAGTAGTCTTATTTATGCTGGATTCATGCAGGGAATATCGGG AACATGTCAAAGATCTTACCTACATCTCAAAGGATCTATGCCGCATTGTTATTGTAGATAACAATCCCTTCAGCTTTTTATTGCAACCAGTAAATGGAAT TCCATGCATCCCATTTTCTGCTGGGCAACCGCATGACACACAGCTTCTTGATGTCATTCTTCCACTTCTCAAGCAACTCTCTGAGCAGAAAGATGTAAGA CCTATGCTCTATGAAAAGTTCCACATGCCGGATTGGTTTCAAAAGCAAGGAATTCCAGCTTCCTGCTGGACATAGTAGGATTAAGATCACTTGCCAGTAA GGTCTTTCTTCTTCTTTTCCTTTTTTTTGTTGATATTCTTAATTATATTGGTGGAAGCATAGACGCCAATTGGCACATCCGGAGGTTTCAAATGCTGCTT CTTGGAGTCATGTCCGTTCCTCATTTAAGTATGTAGATTGCCATAATGTTGATTCTTGTTTATAGGCTTGCTTTGTGTTGGGAATTATGCTGATTCTTGT TTATAGGCTTGCATAGTTGCATTCTGTTGGGAATAATCTCATTAGTAACTTGTACAATTATTTATCAATAATCATTAGCAGTTCAAAAATTCATTACATT GCTTAGTGACAGAATCTCTGAAAGTATATCACAATGTTTTGTTGTATCAGTAAAGAAGAAAAAGCTGTTAGTATTGAGCTTTTAAAGCTGTTATTGTACT TATTGGTCTTGGTCATTAGCAGAAATACTATGCTTTTGGCGCTTTTTTTCTTTACTTTATCCCCCCTTCTTAATTTCTGGACAAGGATCTGCTGTCCCAA ATCTTGTCCTAAAGTCTGTATCAAACTAATAACATGTCACATCAGTCAAAAAATTAAACGTTCATATTTTTATTTATTTTTTCTTCACTCTGTTTGACTT TGTACATGGTTGGG
• Tissue: flowers
• Gene name: LI_gene_67093;
• Additional information: details;

Expression of Ll_transcript_52988

FPKM

• FPAB: 2.6
• FPNAB: 0.1
• LF1: 0.8
• LF2: 0.4
• LF3: 0.7
• LF4: 0.8
• UF1: 0
• UF2: 0.5
• UF3: 0.9
• UF4: 1.2

Labels

• FPAB: abscising flower pedicels
• FPNAB   : non-abscising flower pedicels
• LF1: lower flowers stage 1
• LF2: lower flowers stage 2
• LF3: lower flowers stage 3
• LF4: lower flowers stage 4
• UF1: upper flowers stage 1
• UF2: upper flowers stage 2
• UF3: upper flowers stage 3
• UF4: upper flowers stage 4

Annotations of Ll_transcript_52988

• Blastp: Mitochondrial import inner membrane translocase subunit TIM50 from Phytophthora with 39.73% of identity
• Blastx: Mitochondrial import inner membrane translocase subunit tim50 from Schizosaccharomyces with 38.89% of identity
• Eggnog: CTD (Carboxy-terminal domain, RNA polymerase II, polypeptide A)(COG5190)
• Kegg: -
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019461300.1)
• Pfam: NLI interacting factor-like phosphatase (PF03031.17)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;