| Id Trinity | FTRINITY_DN57293_c0_g3_i9 |
|---|---|
| Name Transcript | Ll_transcript_52905 |
| Sequence | ATTTTTCTTTTCCAAATATTGTTTGGAGTTTCATCCCAACAGTGTCATTCTTTATTTGCCGTCCAGATAGATAATAAGGCATTCATTCATTCTTTGAACC TCAATTAACAACAGCAATGGCACATTCAACCACATCCTCTCTTAGATTCAACTCTCTTGCTTTTTCTTCAACCTTCACTTCTTCTTCCTCTTCTCACTCT CACCACTTTTCTCTTCCCTCTCTCCCTTTCCCCTCCACCACGTATTTTCCTTTTCCCATTTCTCGTCTTGCATTTCTTTTTCCTTTTCTCTTATCAAGTT CGCGTTTTTATTACTTTCCGAGTTGGAGGCTTTTGGATTTAGTGGTGTTGGATTTTTCCCATTTATTTAGTTTTCATAAATTAGGTTACCTAGTTCATAA GATGTGCCTAAATTTCTCTCTCTAAGTGATAAGGGTGAAAAGGATTCTCATGTTCTCATTTTTGGCTTACATATCCATCTAAAAAGATTGCTTTTTTCTT AAGACAAATGATTAATATAGGGTCTGCTGTAAATGGGGCTTTATTTTGAAAAAATATCATTGGTTAATGAAGAGTGTGATTAGGAAATCGAGAGAAACAA TAGCCTCACTAACTTATGAATTCTGATCTCAACTAAACTATTCAAGCTCACACTACCTGCTTACTCCTAGTGTTTTATTTTGTACCTTTTATTTGCATAG TTGTACCTATATTTCTCTTGTAGAGTATTCTCTTTTACCAGATACATTTATTTCTTATACAGAAAATGAAGCATTGCTGTAATTTGCAGGAAATTGAAGA ATTCAGTAGATAATAAAAAAAGTGCCCAAAAATATACCCCGAAGGCGGTGCGTGGTGATGAATTTTGGACACCGGAGAGGAATTCGCATCAGGGTATTTG GTCCATAAGGGATGATTTGGGAGTCCCATCTTCTCCTTATTTCCCTGCCTATGCACAAGGGCAAGGTCCACCCCCCATGGTGCAGGAGCGTTTCCAGAGT GTTATAAGCCAGCTTTTTCAATATAGAATAATCCGGTGTGGTGGAGCTGTTGATGATGATATGGCAAACATTATAGTTGCTCAGCTCCTTTACCTTGATG CAGTTGATCCTAACAAGGATATTGTCATGTATGTAAATTCTCCAGGAGGATCCGTTACAGCTGGTATGGCAATATTTGATACAATGAGGCATATTCGACC TGATGTATCCACTGTTTGTGTTGGATTAGCTGCTAGTATGGGAGCTTTTCTGCTTAGCGCCGGGACCAAAGGAAAGAGATACAGCTTGCCAAATTCAAGG ATAATGATTCATCAGCCGCTCGGAGGTGCACAAGGAGGGCAAACTGACATAGATATTCAGGCAAATGAAATGTTGCATCATAAGGCAAACCTGAATGGAT ATCTGTCCTATCACACTGGCCAAAGTTTAGAGAAGATTAACCAGGACACAGACCGTGATTTTTTCATGAGTGCAAAGGAAGCCAAAGAATACGGACTCAT AGATGGTGTCATTATGAATCCTCTCAAAGCTCTCCAGCCATTAGCGGCTGCGGTGGAGGGTAAAGATCCGGCCAGTGTTTGAACTTGAGAGAGTTGAGAC TGTTGGTTGCACTTCATTTTCCAAGTTATAAAAAACATAGGGTTAAACAAAAACAATGTTTTTGGTTGCTGAGGCCAACTGTGTGCCCATAAATGAGATA AAAGTGACACTTTTCTATTTGATCCTTATTGGTGGTGTTCTATTGATAGGCCATTGGTACATATATTATTATAAATGAGTGAAGTGATGGTTTTATAAAA GAGTAAAAACTCATTCAGACTCTCAAGATTTCGTACAAATTTCGTATCCAAAAAAAATTAATTATCAAAGTAGATAACATAATAAATGGATACTTCAGTT ACAGAAAAAACATTTGAAGGAGAGTTCCCAATTTAGAAAGATAATCTGCACAGAAATTTCCTTCCACAAGATAATCCCACTATGAAAGATTAGTGATTAG ACTCTTCTCCAATGTATAACTACTAGTATATTGTTTTGTTG BLAST |
| Tissue | flowers |
| Gene name | LI_gene_67499; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_52905
| Blastp | ATP-dependent Clp protease proteolytic subunit 5, chloroplastic from Arabidopsis with 98.44% of identity |
|---|---|
| Blastx | ATP-dependent Clp protease proteolytic subunit 5, chloroplastic from Arabidopsis with 90.2% of identity |
| Eggnog | Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins (By similarity)(COG0740) |
| Kegg | Link to kegg annotations (AT1G02560) |
| CantataDB | Link to cantataDB annotations (CNT0001990) |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019428627.1) |
| Pfam | Clp protease (PF00574.22) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |