| Id Trinity | FTRINITY_DN57319_c2_g1_i12 |
|---|---|
| Name Transcript | Ll_transcript_168705 |
| Sequence | CAGAGTCTGCAAAAACAGCCATTCTTCCAATTAACGTTCACCAAAAACCCTAGCCTTCGATTGCATTGTGGTAAGCCCTCATCTCAAACTTGAAATTTTA AATCTCTGCGTCCTTTTTTCAAACACCCTTTGTGCTAAAGTTTACAAATTTATCATCAAAATTTGATTTTTCACTATCATGGATGATCTGGAGAAAGCAA TTCTTATCATATTTGAGGAATATGGTGCCATTGATAATGAGTTGAAGAAACGTGCTGAGAACTATTGTAATGAAATAAAGGAGAACAAGGCATCAATTTG CAGATTGTGCATTGAAAAACTATGCTTTTCAAATCTTGTTCAAGTTCAGTTTTGGTGCCTTCAAACCTTGCATGATACGATCAAGGCATGTTACTTGTTA ATGGCACCTGAAGAGATATATATGATCAGAAGCTCTGTGTTTTCCATTGTATGTCTTGAACCTGTTGATGACAAGAACCGTAGAAGGGTTCTGGAAGGTC CTGCTTTTGTAAAGAACAAGCTTGCACAGGTTTTGACCGCTTTGATTTACTTTGAGTACCCTTCGATTTGGTCATCCGTGTTTGTCGATTTCTTCCCGCA TTTGAGCAAAGGGAATTTGGTTATAGATATGTTTTGTAGAGTGTTGAATGTGTTGGATGATGAGTTAATTAGTATGGATTACCCGCGAACTGCTGAGGAG TTGTCGGTTGCAACACGAGTTAAGGATGCAATCAGGCAGCAGTGTGTGTCTCAGATAGTGAGATCCTGGTATGACATTGTATCCATGTATAGGAATAACG ATGAGGAGCTATGTACTAGTGTTTTAGATTCCATGAGGAGGTATATTTCTTGGATCGACATTGGGTTGATTGTGAATGATGCTTTTATCCCTTTGTTATT TGATTTGGTTTTGGCTGGTAGCCTGTCTGATTCGCTTCGTGGTGCTGCTATCAGATGCTTGTTAGCGGTAGTTTCTAAGAGAATGGAGCCGCAATCGAAA CTATCTTTGCTTCAAAACCTTCAAATTAGCCGAGTGTTTAGGTTGGTGGCAGAAAATGGTGATGCCGAGTTGGTTTCTGATATATCTTCATTGCTTACTG GCTATGCTGTGGAGGCCTTAGATTGCTTTAAACTTATCAACTCTGAGGATGCTAAAGGAGTCTCTATGGAGCTTCTGAATGAAGTTTTACCCTCGGTTTT CTATGTCATGAAGAACTTCGAGTTAGATGATACATTTAATATCGTCCAGTTTCTTTCAGGTTATGTTGCCACTCTGAAGAACTTTGGTCAGTTGAGAGAG AAACAATTATTTCACGTGGGTCAGATATTGGAAGTTATCCTTGCGCTTATCCGTTATGACCCCACATACCGCACTAATCTTGAAGTGATGGACAAAATTG GGAAAGAGGAGGAAGACAGAATGGTTGAGTTCAGAAAGGATTTATTTGTTCTGCTTCGCACTGTGGGTCGTGTAGCACCTGATGTAACTCACCTGTTTAT CAGGAATTCATTAGCAAGTGCTGTTTCGAGTTCTTCAGAGAGCAATGCAGAGGAGGTGGAAGGGGCACTCTCTCTTTTATATGCACTTGGAGAATCCTTA AGCGATGAATCCATGAGATCCGGAAGTGGATTCCTGAGTGAACTGGTGCTCACCCTTCTATCAACGAAGTTTCCTTGCCACTCTAATAGGCTAGTTGCTC TTGTTTATTTGGAGACAGTGACGAGATATGTTAAATTCATTCAGGATAATACTCAATATATTCCTATGGTTCTGGCTGCCTTTCTTGACGAGAGAGGCAT ACATCATCCGAACATCAATGTAAGCCGCAGGGCTAGCTATTTGTTTATGAGGGTTGTGAAATTGCTGAAGGTGAAACTGGTGCCTTTCATAGAGACAATT TTGCAGAGACTGCAAGATACAGTTGCCCAGTGCACAATTATGAATTCTTCAACAGAAGTTGTGTCAGGGTCTGAAGACGGTAGCCATGTTTTTGAGGCAA TTGGGTTATTGATTGGAATGGAAGATGTCCCGCCTGAAAAGCAATCTGATTATCTATCTTCTTTGCTCCATCCTCTTTGTCAGCAGGTTGAGACGCTGCT CATAAATGCCAAATTATTGACTTATGAGGAGACTAACGCCAAAATTTCTATAGTCCAGCAAATTATCATGGAAATTAATTCTCTCAGTAAGGGCTTCAGT GAGCGTCTTGTAACCACTAGTCGTCCTGCAATTGGTGTCATGTTTAAGCAGACATTGGATGTACTTCTCCAAGTTCTTGTTGTATTCCCAAAAGTAGAAC CTCTCCGGAGCAAGGTCACATCTTTTATACACCGCATGGTGGATACACTAGGAGCATCTGTCTTTCCTTTCCTTCCGAAGGCATTGGAGCAAATGCTTGC TGAAACCCAGCCAAGGGAGATGATTGGTTTCCTTATGTTGCTCAATCAACTTATTTGTAAATTCAGTACTTCGGTGCATGCCATTGTAGAGGAAATATTC CCAGCTGTCGCTGATCGGATATTCAGCGTTATTCCAAGAGATGGATTACCTGCAGGGTCTGGTGCAGTCACTGAGGAAATTCGTGAATTGCAAGAACTTC AGCGGACATTGTATACATTTCTCCATGTAATCACTACACATGATCTGTCTTCTGTATTTCTTACCCCAAAAAGTAAAGCATACTTGGATCCAGTGATGCA GTTGCTTTTGTACTCTTCTTGTAATCATAAGGATATTCTTGTAAGAAAGGCATGTGTACAGATTTTCACCAGACTAATTAAAGATTGGTGTGCCGAACCT TATGAGGAGAAGGTTCCAGGTTTTCGAACTTTCATGATTGAATCATTTGGAATAAACTGCTGTTTGTACAGTGTGTTGGACCGATCTTTTGAGCTCCGTG ACACAAATACTTTTGTTTTGTTCGGAGATATTGTGTTGGCTCAAAAGGTCATGTATGAGAAGTTTGGGAATGATTTTCTTGTTCACTTTGTATCAAAAGG ATTTTCTGCTGCACATTGCCCACCAGATCTGGCTGAACAATATAGTCAGAAGTTGCAGGGTAGTGATATCAAGGCTCTAAAATCTTTCTACCAGTCACTT GTAGAAAATTTGAGATTGCAGCAGAACGGAAGTCTTGTTTTCAGATAGCATACTTATACGACAATAACAACAACCGCAGCAACCAAGCCTTAGTCCCACT AGGGTGGCTTGTGTATATAGACTTTTGTGGATGTACCTTAATTTTAACCACTTCTTGTAGAACCTGCTCAATCAGTCAAGTGATGCAGGTCATGCTTTTA TTCTTTAGTCCCACAGTAGTAAATTTTCGGTATTTTTCTCATAAGTTTGAGATTTTCGGCATTTGATCTAACCATATCTTTGTGTTAATTTCGGTTTTAA AAGCAGTTGATTCGATTTATTTGCCCATTGAGATTATGATTTACATCATCAAGGTTTTTGTATATTATGATGTTTGTGCAACATTTAC BLAST |
| Tissue | flowers |
| Gene name | LI_gene_67703; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_168705
| Blastp | Exportin-T from Arabidopsis with 70% of identity |
|---|---|
| Blastx | Exportin-T from Arabidopsis with 70% of identity |
| Eggnog | tRNA nucleus export receptor which facilitates tRNA translocation across the nuclear pore complex. Involved in pre- tRNA splicing, probably by affecting the interaction of pre-tRNA with splicing endonuclease (By similarity)(ENOG410XZDZ) |
| Kegg | Link to kegg annotations (AT1G72560) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019440493.1) |
| Pfam | Exportin 1-like protein (PF08389.11) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |