Id Trinity | FTRINITY_DN57341_c1_g1_i4 |
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Name Transcript | Ll_transcript_168255 |
Sequence | AATATAGTCACTCTTCCTTATCTTGCAGTCAACGAGTCTCTGTCTGTGATACAAACAGTAAAATGCAGAAAGAAGAAAGCAAGAAATGTTGGATTTAGTT GAAAATGGGTTTAAGCAGCACCACTGCTAAACTTTCAGAACTCCCTCTCAGGACATCACTCTCACCATTCACTACTCTCAACTCTATCTTCTTCTCTTCT TCTTCTTCTTCTTCTTCTCACTTTTCTCATACCAATTTCAACAAATTCCCACTTCAATTTCTCAACTCTTTTTCTTCTTCTTCAACCATTCATCGAAACT ATTCATCAAACACCTTATCTTCACCTTGGCTCACTAAATGGCCATCCAATCCCAACCCACCACCCTACCGGAAAACGCTTCCCGATTCCAACCCCCACGA CGGCGACGACGGCCTCTTCGACCCAATCGTTGACACTCGCTATTCCCGCAACAATGATAACGATAAACCCAGCAACGCAATCGACAGAGTCGTTCTTAGC CTTCGCAATCTAGGGTTACAAGACGAAGAACAACAAGAACATGGAGTGAATGAAGTAAGTGGCGATTTTTTAGGACGAGAATGGATTCGGCCTGATACTA GTTTTCGTGAGGATAGTGATGACATGGTTTTGCCATGGGAGAAAGAGGAAGTGGAAGAGGAAAAAGGGGAAATAGAGGGAGAGAAAAATGGGTTGAGGAA GAGAAGGGTAAAGGCGAAAACTTTGGCGGAGATGACTCTTGATGAAGAGGAAATGAGGCGATTGCGAAGAATTGGAATGCAGCTTAGAGATAAAGTTAAT GTGCCAAAGGCTGGTCTCACTCATGTTGTGTTGGATAAGATTCATGATGGTTGGAGAAAGAGTGAGATGGTGAGACTCAAGTTTCATGAGGTTCTTGCAA AGGATATGAAGGCTGCTCATCAAATTGTTGAGCTTCGAACAAGAGGATTAGTTATATGGAGGGCAGGAAGTCTTATGCTGGTGTACCGTGGTAGAAATTA TGAATGGCCAACATCCGGAAGCCAACTGAATAAGAGTTTGTTAAGAACAGAAGGCGATAATGCAACCTCATCTCTGGAAGAGAATGAGCCAGTTATGAGG AATCAAGGACAGCCTGAGATGACACCGGAGGAAGCAGATTTCAACAGACTGCTTGATGATTTAGGTCCTCGGTTTGTTGAATGGTGGGGTACAGGAATAC TTCCCGTTGATGCTGATTTACTTCCTCCTACAGTTCCTGGTTACAAAACACCTCTTAGGCTTCTTCCTGCTGGAATGCGTCCACGACTGACTGATGCGCA GCTGACAAATATGCGAAAAATTTCCAAACCTCTTCCTTGTCATTTTGCCTTAGGGAGAAATAGAAATCATCAAGGTCTGGCCTCTGCTATTCTTAAGCTT TGGGAGACAAGCTTAGTTGCAAAGATTGCTATTAAGCGTGGTATCCAGAATACAAACAGCGAACTAATGGCTGAGGAACTGAAGAAGCTTACAGGAGGTA CCTTGCTGATAAGGAATAAATATTACATTGTAATATATCGCGGGAACGACTTTGTTCCAACCTGTGTAGCTGCTGTTTTAACTGAAAGACAGGAATTGAC AAAACAGGTGCAGGAGGTTGAGGACATGGTGCGGTCTGGAGCTGTTGATGTAACACCATCAGAGGAAGGTGAAACAACAGCACAAGCAGGAACATTAACT GAGTTCTATGAGGCTCAGGTACGCTGGGGAAGGGATGTATCTAGCGAAGAACATGAGAAGATGATGAAAGAGGCAGCCAAAGTCAAGAATGTTAAGCTTT TCAAAAAGATTGAACACAAACTAGCTCGTGCTCAGGTCAAAAGGCTTAGAGCAGAAGAGCTGTTACGTAAAGTTGAAGCATCTCTGGTTCCAGCTGGTCC TGATTATGACCAGGAAACAATCACAGATGAAGAACGTGTTATGTTCCGCAGGGTTGGTTTGAGTATGAAGGCATACTTGGAACTTGGTACACGTGGTGTT TTTGATGGTGTCATTGAGAATATGCATTTGCATTGGAGGCACCGAGAACTTGTTAAATTAATAACAAAACAAAAGACCCTCACTTTTGTTGAAGACACGG CTAGGTTACTGGGATATGAGAGTGGTGGAATATTAGTCTCAATAGATAGAGTTCCCAAAGGATTTACTCTTATTTACTACCGTGGAAAGAATTATAGGCG ACCCATTACTCTGAGGCCTAGAAACCTTCTAACAAAGGCAAAAGCATTGAAGCGTGCAATAGTCATGCAACGCCACGAGGCTCTGAGTCAGCATATATCT GAATTGGGGGAAAAAATAGAAGAAATGAGAAAAGGACTTGCTTCGTCACAAGATTTGAAACCTGAAGATGGGTGCAGCATAGAAGACCGTAATCAAATAC ACCACATATCAGAATTTGCCCAAGTAAGCTACACATCATCTCTCCTTGTTCTATTGTCTGCTCTATTTTGGTATCTTATATGGAAGTGCCTAAATCCTAA TATGGAGTATGAAACTGTAACACTTATCATCTAAAAGAAGGTAAGAGGGAGAAAGATGAATGAAAAAATAAAAAAAATGTTTTATAATTATATTATCAGT TATCTTCTGCATGTTATTTGCAGAGTGAGGATGAAGGTAGTGATTATGATGATAGTGATGCTGGGTTTGATTATGAAGATGACAGTAGTTGGGATGATGA GGATTCTGAGTGTCCAAACTTAGAAAATGATGGGTATCCTTTGAAGGCAGGTTGACACATTCTTTCAAGTTTCTTAAGTTCCTGGAAGAACTCTGCCATT GCCCGCAGCAAGCTGGGTTTTGGGATCAATTTGGTTATTTTGTCAGTATTTCCCCCGGACATTGAGTCATGCTTCCAGTTGTTTGATGGTTCTTCCTCTG CACATTCTTGTAGCTGAAAGTTCGGAATTCGATTTACTCAGTTCTGGAGAGATGTGTTCACAAAATCAATCACCAATTCATTACCAGCTGACTGCCTTGA GATTTTATCTTCTAGGTCTAACTAACTTTTGAGCAGTATGGACAAGCAATATGCTTTCTTTGTATGTTATTCTGATAATATTTATTTAAAAAAGATCAGA AATTAGTAGATGAGAGGGGGCAATAGCACAAAAGAAGAGGATAAGACATCCTCGGATAATGTTATTCTGGTAGTTATGGGTTTCCTGGTTTTTGAAGTCT TGTTTCTTCCTTCAATGGCTTCTTGTACCCCATAGTAAATGTAACATGTATAAATGGATGAGAAACAATTTTGGCTACTGTCATATGAGCAAAATAGCAT TTGTTCACCTTAATTTTGCAGTTTGCACACTTCTTATCATCTCTGATCTCTTATATAGATTGGGTCATGAATCATCAAAGAAGTCA BLAST |
Tissue | flowers |
Gene name | LI_gene_67900; |
Additional information | details; |
FPAB | abscising flower pedicels |
FPNAB | non-abscising flower pedicels |
LF1 | lower flowers stage 1 |
LF2 | lower flowers stage 2 |
LF3 | lower flowers stage 3 |
LF4 | lower flowers stage 4 |
UF1 | upper flowers stage 1 |
UF2 | upper flowers stage 2 |
UF3 | upper flowers stage 3 |
UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_168255
Blastp | CRM-domain containing factor CFM3, chloroplastic/mitochondrial from Zea with 46.14% of identity |
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Blastx | CRM-domain containing factor CFM3, chloroplastic/mitochondrial from Zea with 46.14% of identity |
Eggnog | poly(a)-specific ribonuclease(ENOG410XS9D) |
Kegg | Link to kegg annotations (100126360) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019446257.1) |
Pfam | CRS1 / YhbY (CRM) domain (PF01985.20) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |