| Id Trinity | FTRINITY_DN57365_c0_g1_i11 |
|---|---|
| Name Transcript | Ll_transcript_168560 |
| Sequence | ATCGATTGAATGTATATAAGCTCAACCCAAACTTAATTTTTAACTAGAGAACCCAAAAATCTGAAGGAAGAAGAAAGAAAGAAGAAAAGAAGAGTGAGAA AGTGAATAAAAACCTTAAAACATTTTATTATTATATATATAAATTCTTTGTTACTGCAATTTCCTCTTCCCCCACGCAACAAATAACACCAAAACAAAAC CAAAGCCCTCGTCTTTTCTTCTTTCTCATCTCCATTTTATTCGATCAATTTCACAACTTCTCTTATCTCTTCGAATCTCTCACTTTTCCCCAAATTCTCT TTCTGGGTATTCACCAATTCCACGTTTTTTTGATTTATTTCTTGTCTTCTTCGTAATCATAGAACCTTGGCACAACCATTTATGTCATTTGGGGCATGGA CAGGCTATTTATTCCCCTGCCAGTGTCTTTGAACAATGTTTAGCAGACCAAGAGATCCAAGTGCTTTCAGTATTTTCAAATGGAAACGTCAAGATGAATC ATCAGTGACAACAGGTTTACTTCAGGATGTTCTGCCCGAGATTGAGTTGTCTGATTATAGAAGGATCCCAAGTCCAGGTAGTGAGAGTCCTTCAGGGCTT CTTAATGGTGAAAGCCTAAATGCAGAACCGATTCCTGACTTGGATCTATTCTTTGAAAGGCTTTACAGCTACTACTGTGAGAAAGGACTTTGGTGCATCA TTATAAAGTGGATTGTTGAACTTTTGAGTCTAGGGTTCACGATATGTTTTTCAGGATTCTTTTTACTGTATGTTGATTGGAATGGCCTTCGTAATGCAAA GTGTGGGATGAATGCAGTTGAGTCAGGAATTAAGCCTTGTGATCTTGCTAAAGAAGCTCTTCATCAATACCCGTTGACCCCGTTAACACTTAACAAATCT ATTATTGTTGGATACTTGGGAATATTTTCCATCTATTGGATATTTTGCTTCTTGAGGTTCTTTGCTCAACTAAAGTATACTCTGGAAATCCGACAGTTTT ACTACAATAGTCTCCATGTTACCGACAATGAAATTCAAACCATGCCCTGGGCTACAGTTATTGAAAAAGTTGTTCGGGTGCAAAACTCACAACAACTATG TGTGGTAAAGGATCTTTCTGCTCATGACATGGTGATGAGGTTGATGCGGAAGGAGAACTACTTGATTGGAATGATCAACAAGGGTGTGCTTGCGTTCCCC ATTTCTCAGTGGGTCCCAGGTTCTGGTCCTACAGTGAAATCTGGTCCTAATGGAACACAATATCGCCTAATACTAACCAAGACCCTTGAGTGGACTTTGA ATTGGTGCATCCTGCAAAGCATGTTTGATCGAAACTTTTGTGTCAGAAGGGATTTTGTATCAAATCCAAGGACATTAAAGAAAAGGCTTATGATAGTTGG GCTTGCTATGCTTTTACTTTCTCCATTTCTTGTCATATTCATGCTGGTATATCTCTTTCTGACACATGCTGAACAGTTTTATAATCACCCAAGCACAGCA TCATCTCGAAGATGGTCAAACTTGTCAAGGTGGATCTTTAGGGAGTTCAACGAGGTGGACCATCTCTTCAAACATCGGATTAATAGCAGTGTATTATATG CTTCTGATTATCTCAAGCAATTTCCTTCACCTATCATATCTATCATTGCAAAATTCATCTCCTTTGTATCGGGTGGGTTTGCTGCAGTTCTGATCATCAT TGCTTTTCTTGAGGAGTCTCTGCTAGAGGGTCATATATTTGGTCGGAACTTGTTGTGGTATGCTGCTGTTTTTGGAACTATAACCGCGATTAGCCGGGCT GTAATCAAAGATGAGCTTCTGGTGTTAGACCCCGAAGGAGCAATGTCTATGGTAGTTCAGCATACACATTATATGCCAAAGAGATGGCGTGGCAAAGAAA GTACTGCAAATGTTCGAATTGAATTTGAAACCTTATTCCAGTACACAGGGATGATGTTACTTGAGGAAATGGCATCAATTTTCCTCACTCCATACTTACT TCTGTTTGTTGTCCCAAAGCGGGTTGATGATATCTTGCAGTTCATTGCAGATTTTACTGTGAATGTTGAAGGTGTAGGTCATGTTTGCAGCTTTAGCAGC TTTGATTTTCAAGAGCATGGAAACAGCTATTATGGTTCCCCATTCAATGCTCCTTACAACCGAAGGAGTTCCCAGGGGAAGTTAGAGAAATCGTTTTTGA GCTTTCAGAGTAGTTATCCTACATGGCAGTCAAATGCTCGGGCGAAGCAATTCTTGCTAAATCTGAGAACCTTCAGAGAGCAAAAGCTACCGGGATATGT AAACAGATATGCATATTCCCCATCTAGAATATGGAGAGGTAGTCCCAACATGGGAAACAATGGAGACAGAAACAGGTTCACATCTAGGGAAATGCCGCAT GGTACTTTTGAAACTGGCAATGACTTGGATTCATTGTGGCTAATTGAAGCCAGTCAAAACAATCATCCCTATATTCTTGATTGGTATTATACCTCCCGAC CTCATGATTTGACTCTCGGAGAGGTTCCAATTCCAAATGACCCATTTGATGTTACTGAGCATTATCCCAGAGATTGGATGCCCTCAAACTTGATGAAAAA TGAACCTGGGTATGCTGAATACTTAAACGAGTATCGCGATGACCGAGCTGCTTCTCATCTTGGGGCTTCCACATCAGCTCCCATCTTCAGGGAAAGCCTT ATGGAGGATCACAATTCCAATGATCTACCCCACTCTATCAAGAGCCATTGGTGGGCAAGAAGTCCCCACCAGCAGGACGTGCCGGGTCAGACAAGCTTCT TTGAGCCTCCAGATTTTCATCAGCAAACAACAGCATATAATAATAATTATGATAAATTTTCTGATAGAGATTCTGATAGAGGGTCAGAGGGTAATCATGA TCAAGAACAACACTTGTACTGGAGAGATCGACACGATTTATCTAGAACAGCATACACAGATGATTTAGAGTCAGGAGAAATCAATCTTCACTTTGATGAT ATTTATAGCAGCAGACCTCCAGAAAATCCCACTCTATATTCAAGCACTGCAAGCTTTTGAGTGATGGCCCTGTCATTCATTATTTGTTTGGTAGGTTCTT GCTTTCAAGGATCTGGAAGAGTTTCCAAGTGATGATTGCCCCTTCTATATTACTTGCATGGAAACTCGAAATCCGATTTTTTGTTGTATATAAATTCATT GACTTTGATTAGATTGTTAATGATCCTCAGTTTGATGTTTGGAAAGGCCTGACCTTGGGCTGTGTAGAATGGTTGGTTTAAGAACCATTTTTTCTACAAT AAATCATTCATTGCATAGTGTTCTAATTCTTCACATCCTTTTTGTAACTGATTTATTGCAACTTTTCAATGCAAATTTCACGAAATGACTTGAAGTTTTC ATTGCCAATCATATGGGACTGGAAACTACAGGCGAGG BLAST |
| Tissue | flowers |
| Gene name | LI_gene_68094; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_168560
| Blastp | Autophagy-related protein 9 from Arabidopsis with 66.52% of identity |
|---|---|
| Blastx | Autophagy-related protein 9 from Arabidopsis with 66.52% of identity |
| Eggnog | Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Cycles between the PAS and the cytoplasmic vesicle pool and may participate in supplying membrane for the growing autophagosome(ENOG410XQBE) |
| Kegg | Link to kegg annotations (AT2G31260) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019433827.1) |
| Pfam | Autophagy protein Apg9 (PF04109.15) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |