| Id Trinity | FTRINITY_DN57365_c0_g1_i3 |
|---|---|
| Name Transcript | Ll_transcript_168549 |
| Sequence | ATCGATTGAATGTATATAAGCTCAACCCAAACTTAATTTTTAACTAGAGAACCCAAAAATCTGAAGGAAGAAGAAAGAAAGAAGAAAAGAAGAGTGAGAA AGTGAATAAAAACCTTAAAACATTTTATTATTATATATATAAATTCTTTGTTACTGCAATTTCCTCTTCCCCCACGCAACAAATAACACCAAAACAAAAC CAAAGCCCTCGTCTTTTCTTCTTTCTCATCTCCATTTTATTCGATCAATTTCACAACTTCTCTTATCTCTTCGAATCTCTCACTTTTCCCCAAATTCTCT TTCTGGAACCTTGGCACAACCATTTATGTCATTTGGGGCATGGACAGGCTATTTATTCCCCTGCCAGTGTCTTTGAACAATGTTTAGCAGACCAAGAGAT CCAAGTGCTTTCAGTATTTTCAAATGGAAACGTCAAGATGAATCATCAGTGACAACAGGTTTACTTCAGGATGTTCTGCCCGAGATTGAGTTGTCTGATT ATAGAAGGATCCCAAGTCCAGGTAGTGAGAGTCCTTCAGGGCTTCTTAATGGTGAAAGCCTAAATGCAGAACCGATTCCTGACTTGGATCTATTCTTTGA AAGGCTTTACAGCTACTACTGTGAGAAAGGACTTTGGTGCATCATTATAAAGTGGATTGTTGAACTTTTGAGTCTAGGGTTCACGATATGTTTTTCAGGA TTCTTTTTACTGTATGTTGATTGGAATGGCCTTCGTAATGCAAAGTGTGGGATGAATGCAGTTGAGTCAGGAATTAAGCCTTGTGATCTTGCTAAAGAAG CTCTTCATCAATACCCGTTGACCCCGTTAACACTTAACAAATCTATTATTGTTGGATACTTGGGAATATTTTCCATCTATTGGATATTTTGCTTCTTGAG GTTCTTTGCTCAACTAAAGTATACTCTGGAAATCCGACAGTTTTACTACAATAGTCTCCATGTTACCGACAATGAAATTCAAACCATGCCCTGGGCTACA GTTATTGAAAAAGTTGTTCGGGTGCAAAACTCACAACAACTATGTGTGGTAAAGGATCTTTCTGCTCATGACATGGTGATGAGGTTGATGCGGAAGGAGA ACTACTTGATTGGAATGATCAACAAGGGTGTGCTTGCGTTCCCCATTTCTCAGTGGGTCCCAGGTTCTGGTCCTACAGTGAAATCTGGTCCTAATGGAAC ACAATATCGCCTAATACTAACCAAGACCCTTGAGTGGACTTTGAATTGGTGCATCCTGCAAAGCATGTTTGATCGAAACTTTTGTGTCAGAAGGGATTTT GTATCAAATCCAAGGACATTAAAGAAAAGGCTTATGATAGTTGGGCTTGCTATGCTTTTACTTTCTCCATTTCTTGTCATATTCATGCTGGTATATCTCT TTCTGACACATGCTGAACAGTTTTATAATCACCCAAGCACAGCATCATCTCGAAGATGGTCAAACTTGTCAAGGTGGATCTTTAGGGAGTTCAACGAGGT GGACCATCTCTTCAAACATCGGATTAATAGCAGTGTATTATATGCTTCTGATTATCTCAAGCAATTTCCTTCACCTATCATATCTATCATTGCAAAATTC ATCTCCTTTGTATCGGGTGGGTTTGCTGCAGTTCTGATCATCATTGCTTTTCTTGAGGAGTCTCTGCTAGAGGGTCATATATTTGGTCGGAACTTGTTGT GGTATGCTGCTGTTTTTGGAACTATAACCGCGATTAGCCGGGCTGTAATCAAAGATGAGCTTCTGGTGTTAGACCCCGAAGGAGCAATGTCTATGGTAGT TCAGCATACACATTATATGCCAAAGAGATGGCGTGGCAAAGAAAGTACTGCAAATGTTCGAATTGAATTTGAAACCTTATTCCAGTACACAGGGATGATG TTACTTGAGGAAATGGCATCAATTTTCCTCACTCCATACTTACTTCTGTTTGTTGTCCCAAAGCGGGTTGATGATATCTTGCAGTTCATTGCAGATTTTA CTGTGAATGTTGAAGGTGTAGGTCATGTTTGCAGCTTTAGCAGCTTTGATTTTCAAGAGCATGGAAACAGCTATTATGGTTCCCCATTCAATGCTCCTTA CAACCGAAGGAGTTCCCAGGGGAAGTTAGAGAAATCGTTTTTGAGCTTTCAGAGTAGTTATCCTACATGGCAGTCAAATGCTCGGGCGAAGCAATTCTTG CTAAATCTGAGAACCTTCAGAGAGCAAAAGCTACCGGGATATGTAAACAGATATGCATATTCCCCATCTAGAATATGGAGAGGTAGTCCCAACATGGGAA ACAATGGAGACAGAAACAGGTTCACATCTAGGGAAATGCCGCATGGTACTTTTGAAACTGGCAATGACTTGGATTCATTGTGGCTAATTGAAGCCAGTCA AAACAATCATCCCTATATTCTTGATTGGTATTATACCTCCCGACCTCATGATTTGACTCTCGGAGAGGTTCCAATTCCAAATGACCCATTTGATGTTACT GAGCATTATCCCAGAGATTGGATGCCCTCAAACTTGATGAAAAATGAACCTGGGTATGCTGAATACTTAAACGAGTATCGCGATGACCGAGCTGCTTCTC ATCTTGGGGCTTCCACATCAGCTCCCATCTTCAGGGAAAGCCTTATGGAGGATCACAATTCCAATGATCTACCCCACTCTATCAAGAGCCATTGGTGGGC AAGAAGTCCCCACCAGCAGGACGTGCCGGGTCAGACAAGCTTCTTTGAGCCTCCAGATTTTCATCAGCAAACAACAGCATATAATAATAATTATGATAAA TTTTCTGATAGAGATTCTGATAGAGGGTCAGAGGGTAATCATGATCAAGAACAACACTTGTACTGGAGAGATCGACACGATTTATCTAGAACAGCATACA CAGATGATTTAGAGTCAGGAGAAATCAATCTTCACTTTGATGATATTTATAGCAGCAGACCTCCAGAAAATCCCACTCTATATTCAAGCACTGCAAGCTT TTGAGTGATGGCCCTGTCATTCATTATTTGTTTGGTAGGTTCTTGCTTTCAAGGATCTGGAAGAGTTTCCAAGTGATGATTGCCCCTTCTATATTACTTG CATGGAAACTCGAAATCCGATTTTTTGTTGTATATAAATTCATTGACTTTGATTAGATTGTTAATGATCCTCAGTTTGATGTTTGGAAAGGCCTGACCTT GGGCTGTGTAGAATGGTTGGTTTAAGAACCATTTTTTCTACAATAAATCATTCATTGCATAGTGTTCTAATTCTTCACATCCTTTTTGTAACTGATTTAT TGCAACTTTTCAATGCAAATTTCACGAAATGACTTGAAGTTTTCATTGCCAATCATATGGGACTGGAAACTACAGGCGAGG BLAST |
| Tissue | flowers |
| Gene name | LI_gene_68094; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_168549
| Blastp | Autophagy-related protein 9 from Arabidopsis with 66.52% of identity |
|---|---|
| Blastx | Autophagy-related protein 9 from Arabidopsis with 66.52% of identity |
| Eggnog | Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Cycles between the PAS and the cytoplasmic vesicle pool and may participate in supplying membrane for the growing autophagosome(ENOG410XQBE) |
| Kegg | Link to kegg annotations (AT2G31260) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019433827.1) |
| Pfam | Autophagy protein Apg9 (PF04109.15) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |