Ll_transcript_168550

• Id Trinity: FTRINITY_DN57365_c0_g1_i4
• Name Transcript: Ll_transcript_168550
• Sequence: ATCGATTGAATGTATATAAGCTCAACCCAAACTTAATTTTTAACTAGAGAACCCAAAAATCTGAAGGAAGAAGAAAGAAAGAAGAAAAGAAGAGTGAGAA AGTGAATAAAAACCTTAAAACATTTTATTATTATATATATAAATTCTTTGTTACTGCAATTTCCTCTTCCCCCACGCAACAAATAACACCAAAACAAAAC CAAAGCCCTCGTCTTTTCTTCTTTCTCATCTCCATTTTATTCGATCAATTTCACAACTTCTCTTATCTCTTCGAATCTCTCACTTTTCCCCAAATTCTCT TTCTGGGTATTCACCAATTCCACGTTTTTTTGATTTATTTCTTGTCTTCTTCGTAATCATAGAACCTTGGCACAACCATTTATGTCATTTGGGGCATGGA CAGGCTATTTATTCCCCTGCCAGTGTCTTTGAACAATGTTTAGCAGACCAAGAGATCCAAGTGCTTTCAGTATTTTCAAATGGAAACGTCAAGATGAATC ATCAGTGACAACAGGTTTACTTCAGGATGTTCTGCCCGAGATTGAGTTGTCTGATTATAGAAGGATCCCAAGTCCAGGTAGTGAGAGTCCTTCAGGGCTT CTTAATGGTGAAAGCCTAAATGCAGAACCGATTCCTGACTTGGATCTATTCTTTGAAAGGCTTTACAGCTACTACTGTGAGAAAGGACTTTGGTGCATCA TTATAAAGTGGATTGTTGAACTTTTGAGTCTAGGGTTCACGATATGTTTTTCAGGATTCTTTTTACTGTATGTTGATTGGAATGGCCTTCGTAATGCAAA GTGTGGGATGAATGCAGTTGAGTCAGGAATTAAGCCTTGTGATCTTGCTAAAGAAGCTCTTCATCAATACCCGTTGACCCCGTTAACACTTAACAAATCT ATTATTGTTGGATACTTGGGAATATTTTCCATCTATTGGATATTTTGCTTCTTGAGGTTCTTTGCTCAACTAAAGTATACTCTGGAAATCCGACAGTTTT ACTACAATAGTCTCCATGTTACCGACAATGAAATTCAAACCATGCCCTGGGCTACAGTTATTGAAAAAGTTGTTCGGGTGCAAAACTCACAACAACTATG TGTGGTAAAGGATCTTTCTGCTCATGACATGGTGATGAGGTTGATGCGGAAGGAGAACTACTTGATTGGAATGATCAACAAGGGTGTGCTTGCGTTCCCC ATTTCTCAGTGGGTCCCAGGTTCTGGTCCTACAGTGAAATCTGGTCCTAATGGAACACAATATCGCCTAATACTAACCAAGACCCTTGAGTGGACTTTGA ATTGGTGCATCCTGCAAAGCATGTTTGATCGAAACTTCTGTGTCAGAATGGATTTTGTATCAAATCCAAGGACATTGAAGAAAAGGCTTATGGTAGTTGG GCTTGCAATGCTTTTACTCTCTCCATTTATAGTCATATTCATGCTGGTATATCTCTTTCTGAGGCATGCTGAACAGTTTTATAATCACCCAAGCACAGCA TCCTCTCGAAGATGGTCAAATTTGTCAAGGTGGATCTTTAGGGAGTTCAACGAGGTGGACCATCTCTTCAAGCATCGGATTAATAGCAGTGAATTACATG CTTCTGATTATCTCAAGCAATTTCCTTCACCTATCATATCTATCACTGCAAAATTCATCTCCTTCATGTCGGGTGGTTTTGCTGCAGTTCTGATCATCAT TGCTTTTCTTGAGGAGTCTCTGCTAGAGGGTCACATATTTGGTCGGAACCTGCTGTGGTATGCTGCTGTTTTTGGAACTATAACAGCAATTAGCCGGGCT GCTATCACAGATGAGATTCTCGTGTTAGACCCTGAAAGAGCAATGTCTATGGTAGTTCAGCATACACATTATATGCCAAAGAGATGGCGTGGAAAAGAAA GTACTGTAAATGTCCGAATGGAGTTTGAAACCTTATTCCAATATACTGGGATGATGTTACTTGAGGAGATGTCATCAATTTTCCTTACTCCATACTTACT TCTATTTGTTGTCCCGAAGCGGGTTGAAGATATCTTGCAGTTCATTGCAGATTTTACTGTGAATGTTGAAGGTGTAGGTCATATTTGCAGCTTTAGCAAC TTTGATTTTCAAGAGCATGGAAACAGTAATTATGGCTCCCCGCACAATGCTCCTCACAGCCGGAGGAGTTCCTGGGGGAAGTTTGAGAAGTCGTTTTTGA GCTTTCAGAGCAGTTATCCTTCATGGGAATCAAATGCTCAAGGTAAACAATTTTTGCAAAATCTGAGAACCTTCAGAGAGCAAAAGTTACCGGGACATGT AAACAGATATTCATATTCCCCTCCTAGGATGTGGAAAGGTAGTCCCAATATGGAAAGCAATGAAGACAGAAAAAGGTTTATATCTCGGGAAATGTCACAT CATACTTTCGAAACTGGCAATCACTTGGGTTCCTTGTGGCTAATTGAAGCCAATCAAAACAATCACCCCTATCTTCTCGATTGGTACTATACTTCCCGAT CTCACGATGTGACTTCCAGAGAGGTTCCAATTCCGAATGATCCATTTGATGTTAATGATTGTCATTCTGGAGTTTGGATGCGCTCAAACTTGACAGAGAA TGAACCTGGGTATGATGAATACTTGAACGAGTATCATGATGATAATCGAGCTGCTTCTTATCTCGGAGCTTCCATATCAGCTCCCATCTTCAGGGAAAGT TTAATTCAGGATCAAAGTTCCAATGATCAGCCCCACACTACCAGGAGCCATTGGTGGGCTAGAAGTCACCACCAGGATGAACCGGGTCAAACAAGCTTCT TCGAGCCTCCAGATTTCAATCAGCAAACAACAGCATATAATAACTACTATGATAAATTTTCTGATAGAGGAGGCTCAGAGGGTCATCATGATCAGGAACA ATTGTATAGGAGAGATGAGCACGATTTATCTAGAACAGCATTCACAAATGACTTAGAAGCTGGAGAATTCTATCTTCATTTTGATGATATTTATAGCAGC AGGCCTCCACAAAATCCCACTGTAAATTCAAGCACTACAAGCTTTTGAATGATGCCTTTGTCCTACATAATTGCAAGAGTTTCATAGTGATGATTGCCCC TTCTATTCCATGGAAAGGGGAATTTGATTCTTTGTTGTAAATAGACTCATTGACTGTGATTAGATTGTTGATGAGCCTCAGTTTGTTGTTTAAGAACCAA ATGTTTCTTCTGCTAAAAATCATTCATGGCATGCAGTTTTCTAATTCTTAAA
• Tissue: flowers
• Gene name: LI_gene_68094;
• Additional information: details;

Expression of Ll_transcript_168550

FPKM

• FPAB: 7.8
• FPNAB: 2.4
• LF1: 2.5
• LF2: 3.2
• LF3: 3.2
• LF4: 2.1
• UF1: 2.3
• UF2: 3
• UF3: 2.7
• UF4: 3.1

Labels

• FPAB: abscising flower pedicels
• FPNAB   : non-abscising flower pedicels
• LF1: lower flowers stage 1
• LF2: lower flowers stage 2
• LF3: lower flowers stage 3
• LF4: lower flowers stage 4
• UF1: upper flowers stage 1
• UF2: upper flowers stage 2
• UF3: upper flowers stage 3
• UF4: upper flowers stage 4

Annotations of Ll_transcript_168550

• Blastp: Autophagy-related protein 9 from Arabidopsis with 65.58% of identity
• Blastx: Autophagy-related protein 9 from Arabidopsis with 65.58% of identity
• Eggnog: Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Cycles between the PAS and the cytoplasmic vesicle pool and may participate in supplying membrane for the growing autophagosome(ENOG410XQBE)
• Kegg: Link to kegg annotations (AT2G31260)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019434383.1)
• Pfam: Autophagy protein Apg9 (PF04109.15)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;