| Id Trinity | FTRINITY_DN57367_c0_g1_i30 |
|---|---|
| Name Transcript | Ll_transcript_166388 |
| Sequence | ATTTCTCCCCCAACAACTCACTACACACTAAAAATACTTTCAGTTAAACAGAGAAAACGAAGGCGAAAGCGAAGGTTAAGAAGATTAAGATTTTCTCAAC CGAAAATTTCTCGCTTCAACGTTCGATTATTCGGATCCAATACTCAAATGAAGGCTATTAATCCTCTCATCACTTTCGAACACAAGAGGGATGTATATGG ATTTACTGTGCGACCTCAGCATCTGCAAAGTTACCGTGAATATGCTAATATATACAAGGAGGAAGAAGTGGAAAGGTCAGATCGATGGATGTCATTTCTA GAAAGGCAAGCAGAGTCTTCTGAATTTGCCACAGACAGATTAGGTGTTGAGGAAGATGAGACAGTTTTGAGGGCTCAAGCCTTAGAGCACGAAGCTGATG CTGGCACGGAGAAAGCTGTTGATGGAGATGAATTAGGCACCCAGAAGCCTGGTTCTGATACTACAGCTGAAAATGATAGTCCGAAAGAGGAGACTGAAGT TGATAGAGTCCTATTATGGACAGAGATAAGACCATCTCTTCGTACTATCGAGGATATGATGAGCATTCGTGTGAAGAAGAAAACTGCGTCAATGAAAACT ATTGGAAACAAGAAGGGCATGTTAAAGGATGAACAGATTGTTGGAGATGGGAAATCACTATCTCATACTGATGGTGCAAAATCACGAAAGGAAGGGTTTG TGGAAGACTCTGACGATGAGTTCTATGAAGTTGAGAGGTCAGATCCTAGTCCAGATACACCTACAGTTGATGGCACGAGTGCCTCTGCAAATGGTATTTC TGCTGACACTGGAACACTTGAGGCTTCATTTCCTTGGAAAGAAGAGTTGGAAGTTCTTGTTCGTGGAGGAGTGCCAATGGCACTGAGGGGAGAGCTTTGG CAAGCTTTTGTGGGTGTAAAAGCAAGGCGTCGGGAGAAGTATTATCAGAATCTGCTAGCTTCAGAGAATGATTCTGAAAGAAAAATGGATCAGCAAAGCA TGCAGCAGTCAACTGACGATAATGGGAAAACCAATGCAAATCCTGTATTTGTGTCAGAAAAATGGAAAGGGCAGATTGAGAAGGATCTGCCACGAACATT TCCTGGTCACCCTGCTCTGGACCAGGATGGTAGAAATGCTCTGCGGCGATTACTTACTGCATATGCTCGACATAATCCCTCAGTTGGTTATTGCCAGGCC ATGAATTTTTTTGCTGGTTTATTGCTGCTTTTGATGCCTGAAGAAAATGCATTTTGGACCTTGATGGGAATTTTAGATGATTATTTTGATGGTTATTATT CTGAGGAAATGTTAGAATCCCGGGTGGATCAACTTGTTTTCGAGGAGTTGGTGCGGGAGAAGTTTCCCAAACTGGCTAATCATCTTGATTATCTGGGAGT GCAGGTAGCATGGGTAACTGGACCATGGTTCCTTTCCATTTTTGTGAACATGCTTCCTTGGGAAAGTGGTCAGGCTTTACGTTTTATCTATTGAGTAGTG TATCTTAGTTTTAATCCATAAAGTATCCAATGTGAAATGAACATTTACTCTCTATACTTTGTGCCTCCTCATGACTAAAGTAATTATTTGGACTTCAGTT CTTCGAGTGTGGGATGTGCTTCTTTTTGAAGGAACCCGAGTGATGCTATTTAGAACTGCAGTCGCTTTAATGGAGCTATATGGTCCAGCATTGGTAACAA CTAAGGATGCTGGAGATGCAGTTACTTTACTCCAGTCATTGGCTGGCTCCACATTTGATAGCAGTCAGCTTGTATTGACAGCTTGCATGGGTTTCCAAAA TATAAATGAAGTTAGATTGCAAGAGCTGAGGAATAAACATCGGCCAGCTGTAATAGCTGCAGTTGAAGAAAGATCAAAAGGGCTTAAAGCTTGGAGGGAT TCTAAGGGCCTGGCGTCAAAGCTATTTGGTTTTCAACATGATCCTAAAATGGAGCAATCGGGGAGCTTATCTCGTTCAGAATCCGGTTCCACTAATGCAG AGGAAATTCTGATTAGTCTGACTGGGGAGGGTGAGATTGATTCTGTTCCAGATCTTCAAGAGCAGGTCGTATTTATCTTTCCTGTTATCCTCTCCCCTTT ATATTAGACCATAATTGTTAAGATAGTCCCACATTGGATGGGAATATGGCCTAGCCATTCCTTATAAGGCTTAGCCTTTTGGGGTTGGGTTAGGCCTAGC CTGCACAATTCTAATAATAATAAGTTAAAAAGTGGTAGTTAGTTTGGGGACCCATTAATGCTTTTATTTTTCTTCGATGAGCCATTAACGACAACTGTAG TTAATTTAGTTCAAGTGTGGTTAATTTAGTTCACAAATCCCTCCCAAAAATGAAAAAAAAAGTTGTTGATCTTATGTTGTGAACTTCATGCAGGTTGTCT GGCTGAAGGTTGAACTTTGCAGATTACTAGAGGAGAAAAGATCGGCTATTCTCAGAGCGGAGGAACTTGAAACAGCATTAATGGAGATGGTCAAGCAGGA TAATAGGCGGCAACTGAGTGCCAAGGTTGAGCAGAATTTGGCCTGAAGCTAAAATATGAGCCGTAATTACTCAAGAGTCACGGTTGGGTGTAGAGATAAT CAAAGGAGTTTACAAACCTCCAAAATACCAAAATGAAAGGAACTCTTACACAGGCTTGACTATTTCAACTTTTTGTTACGGTTGGGATTCCCCCCCCCCG AAGATGAACTATCTTAACATACTAAGCTTTATAACTAAATAGCTCATTCATTAATGCAAGGATCTCTTTCGCATGAGCTATTATCCTCTAAACACACGGC TGGCAAGAGGCAAATGGAAAGAATGATAATACGGGTCTCTGCTATCATCAACAAGGAAAATATAGTATTTACTTGGATATGCTTCACAGTTTACCAGATC CTGCATAGACATTGATCGTCTGACTTGTGGTTGTTGTAAAATGGCAAGTATGATGCACAGATATGCCAAAAGTGGTGCGTTGATTGCTTGGTGTGTTCCT TGTTTTGTTATATCTACCGCCCTGGTACTTGAAACTGGCTGTGATTGATGTAGTGAAATAAGCATTTATGTGAATTTAGTTAGCTAGATGCCTTCTTGTT TGAATGCTAATTTGTTATTTGAGAAGTTAACTATGTGATTCTTATCAATGTCAGGTTGAGCAACTAGAGCAAGAGATTGCTGAGCTTCGACAGGCACATG CTGATAAGCAAGAACATGAAACTGCTATACTCCAGGTCTTGATGTCAATGGAGCAAGAACAAAAGGTGACCCAGGATGCTCGCAGGTTCGCTGAGGAAGA TGCAGCAGCACAAAGATAT BLAST |
| Tissue | flowers |
| Gene name | LI_gene_68101; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_166388
| Blastp | TBC1 domain family member 8B from Homo with 37.5% of identity |
|---|---|
| Blastx | TBC1 domain family member 8 from Mus with 35.68% of identity |
| Eggnog | TBC1 domain family member(COG5210) |
| Kegg | Link to kegg annotations (54885) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019441616.1) |
| Pfam | Rab-GTPase-TBC domain (PF00566.17) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |