Id Trinity | FTRINITY_DN57396_c2_g1_i9 |
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Name Transcript | Ll_transcript_168061 |
Sequence | GTAGGTTCAAACATCCAAGGTTAGTATTCTAAAATTTCAGTTGGATATGTGTGTGATTGCTCCCCCTGAATACTAACTTTGCAGTAGTAGGGCTGGTTCT CAAAAAAGGTTACATCCATGGTGTGGTAGAATTTCTTGGTGACAAGTGAGTAACATCTGTACCCTTTTTGGTGAGGTGAGTAGCGAAGGAAAATGCACTT AATAGATTTTGGTTCAAGTTTGCTACGATGTGGATTGAGGTTGTGGACGAATGATGAACATCCAAAATATTGTAAGGGAATGGAGGTGAGTATTTTACTG GTTGGGAAGAAGGTTTGTAGTGTGGAGAGGGGGGTCTTAAGGTTGAGGATTCGAGAAGGCATTCTATTTATGAGGTATGTTGTTGAAAGGACAACTTCCC CCCAAAAATGTTTTGGGAAATTTGTGGCTAACATAATTGATCTAGTTACTTCCAAAATATGTTTGTTCTTCCTTTCGGAAACTCCGTTTTGTTGTGGGGT GTCCCCACAAGAGCTTTGGTGAACAATGCCAACTTTCCGTAGGTAGGAACTTAGTACAGAATTATAGTATTCACGACCATGATCAGTTCTGAGTACTTGG ATCTTGCTTTGAAATTGGGTTTACACCATATTATGAAAGGCCTCAAAGATGCCCCCTACTTCTGATTTTTCCTTCATTAGAAACACCCATGTAACTCGTG TGTGATCATCAATAAACATGACAAACCATCTTGAACTAGTAACATTTTTAATGCGTGATGGTCCCCATACATCACTATGAATTAGGGAAAATGGTTGGGT TGGCTTATAGGGTTGGGGTGGGTATTTGCTACGTGTATGTTTGGATAATTGACAAATTTCACACTGAAAATGCTTCTGATTTTTATTAAATAATGAGGGA AATAATTTTTCCAGGTACATGAAATTTGGGTGGCCTAATTGATAGTGCCACAACATTATGGAATTATTAATGCTTGGAACAATAGCTGCTGCATATGACT GGTTCTCGAGTCTTTCTAATTCCTCAATTTGAAGTAGGTAGAGTCCAACACACTCTTTAGCACTGCCGATCGTCTTCCCCGACTCTAAAATCTGAAATTC ACACAAGTTAGGTGAGAATTTAGTAACACATTTTAAATCTCTTGTGATCTTGCTAATGGACAGCAAATTGCAATCAAGTTTTGGCACATATAGAACAAAA TCAAGTGTAATATTAGGTGAGAGAGTAATTGATCCTGTATCCATGACCTTAGAGTGTGTGCCATCTGCTATTCGAACACTGAAGTTAGATGGGCAAGGAG AATAACTATTAAACAAGTTAAAATTTCCAGTCATGTGATCCGAAGCCCCCGAGTCAACAACCCATGACTTTGTTTTTTCCTTGCTAGTATTTAGAGCATG TGAGAAATTACCTCTTTGAGCCACTACTGCAGTACCACCCTTTTCTGCATAAGTTTGTTTGAGGAGTTTTTGTAGAGCCTCCATTTGTTCCCTGCTAAAT GGAGATGAGTCAGAATTTACCTCAACTTCTTGGTGGTTGAATACTATGTTGCCTCTGCTGTCCCTGCTTTTGAATTGCTTCACTTCTATGGGTTTTCCAT GTATAACCCAACATGTTTCTCTTGTGTGGCCTGACTTCTTGCAATGATCACACCAAGGGCGATTTTTCTTTTGAAATGGCCGAATCTGGTTTCCTCTTGC TGCCATTGCTGAGCTCTCGATGGAGGGTGATGAGATGTTATTTCCTAACATGAGTTTCCTTTTGCTCTCTTCTCTCCTCACTTATGAGAAGACTTCCCAA ATTTTGGGAAGAGGTTTGGTTCCAAGGATCCTTCCACGGACCTCATCAAGGTCCTTGTTTAGTCCCAAAAGGAACTTATAGATTTTGTCCTTCTCCGCCA GCTCTTTGAATTTTTTATTATCCTCTGGACAGCCCCATGTGACTTCTTCATATATGTCTAGTTGTTGCCAATGTCTACTAAGTATATTAAAATACTCAGT AACTGAAGATTCTCCTTGTCGAAGGTCATGTAGGATGCTTTTTATCTCAAATATGGCAATGTCATAGAACATGAAATTCTCACCAATTTCATTGGTCATG GTGTTGAGCAGCCATGACATTACTTGGCTGTTCTCAAGTTGCCATTTTTGAAGGTTAGTGTTTTCTTCCTCAGGACATATTGTGTCCCCGGTGATGTAGC CTTCTCTTCCCTTTCCTTGAAGGAAGATCTTGACTGATCTTACCCATTGGATATAATTTTGACCATTTAATTTATGGGCAGTGATGAGATGATTGAGCCC ATCGTGTGAGCTGGTTGGAAATGATCCAGTCTCCAACTTTGGCTGCTCGTCGGAAGGTTCCCCCATTGCTGGATGCTCTAGGATTTTCTTAGGAATGGAT CAGATCGAGCTATGATACCATGCGAAATTCTGATTTTATTTCTCTTGTCTTTTTACAATTATACAAAGCATAATTTATACACATTAGGGGATTAAAACTG AGCGCTAATCTAGCCTAAGAATGAGGGAAGTTATTCCCCTTATAATTGCTAATTATAATAAATAGGGAAAGCTAGAAATCTGCTAATACTAATGTACATT TAAAGACATAATGTTGTCATAAAACTATACAAATCAAGATCATTTGATTCTCCTTAATTTGTGCCAATCTTCAACACTCCCCCTCAATCTGGGTGGTAGA TATCTATCATACCCAGATTGGACCTGATTCTCTCGTATGTGTTCCTTGGAAGAGCCTTTGTCAAAATGTCTGCCGTTTGTCTGCTTGATGAAACATGGTC AACACTTATGATAAATTTTCTCTTTAATGAAGTGTCTGTCAATTTCCACATGTTTTGTTCTATCATGGTGAACTGGGTTCTTTGCAATGATTATGGCAGC CTTGTTGTCACAAAGTATTCTCATAGTGTAGTTAGTGGGAATTTTGATTTCATCCAACATTCGTTTGAGCTAGATCCTTCACCAATTCCTTGTGCCATAG CTCTAAATTCAGCTTCTGCACTACTTCTAGCAACCACAGATTGTTTCTCACTTCTCCAAGTTACCAAGTTTCCTCATACAAATGTGCAATAGCCTGTAGT GGATTTCCTGTTAGATAAACTCCCTGCCCAATCTGAGTCAGTATAGACTTCAATTCCTTGGTTCGAGTTCTTCTGGAAGTGGATCCCGCGACCAGGTGTA CCCTTTAAGTATTGTAGGATTCTATTTAAAGTCTTCATGTGAGTTTCAGTTGGATTAGACATGTAGCGACTAGCCAGACTTACAGCAAAACCAATGTCGG GTCTAGTGTGGGTTAGATAGATTAATTTTCCAACTAAGCTTTGGTATCTGTCCTTCTCAGCTGGTATATTTTCTTCCTCACTCCATTTCATAGGTTCTAT GGGAGTATTGGCAACTTTGCATCCAAGCATCCTTGTTTCTTTCAGTAAATCCAGAGTGTACTTCCTTTGAGAAACATAAATACCATCCCTTGTTCGAGCA ACTTCCATCCCTAAAGAGTACTTGAGTTGGCCCAAATCTTTGACTTCAAATTCTTTGGTTAAAATACTCTTGAGGTGCTTGATTTGATTATGATCATCTC CTGTAATAATAATATCATCAACATAAACAATAAATAAGGCTATTTTTCCATTCGTAGAGTGCTTAACAAACATAGTGTGGTAGGTTTGGCATTGGACAAA GCCATCTTCCTTGACAACTCTTGTTAGTCTACCAAACCATGCCCTTGGTTTCCCATGTGCCTTTTCAATTTCATTGTCCTTGATTCTGATGGGTTGCTTC AATTTCATTGTCCTTTTAATTTTCTTTCCTGACCATTGCTTCAGTTTCTATTACAACATCCGGTCCAGATTCTACTGTCCTTTCAACTGGGTTAAGAGCA TATTCGGTAGGTTCAAACATCCAAGGTTAGTATTCTAAAATTTCAGTTGGATATGTGTGTGATTGCTCCCCCTGAATACTAACTTTGCAGTAGTAGGGCT GGTTCTCAAAAAAG BLAST |
Tissue | flowers |
Gene name | LI_gene_68354; |
Additional information | details; |
FPAB | abscising flower pedicels |
FPNAB | non-abscising flower pedicels |
LF1 | lower flowers stage 1 |
LF2 | lower flowers stage 2 |
LF3 | lower flowers stage 3 |
LF4 | lower flowers stage 4 |
UF1 | upper flowers stage 1 |
UF2 | upper flowers stage 2 |
UF3 | upper flowers stage 3 |
UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_168061
Blastp | Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 27.84% of identity |
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Blastx | Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 32.64% of identity |
Eggnog | - |
Kegg | - |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_020218570.1) |
Pfam | GAG-pre-integrase domain (PF13976.5) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |