| Id Trinity | FTRINITY_DN57694_c1_g2_i2 |
|---|---|
| Name Transcript | Ll_transcript_148836 |
| Sequence | AACACTTTGAGATGAACCTAGCCATGATTCAATCCCGGTTAAACCTAAACCTTGTATTCTTCACCATTTTCTTTCTCATTCTTCCTCTTTAGGAAAAACT CACTCTCCATTTCGCATATGCTTTTTTTGTACTTTCACGCTTCCCATTAACACTCTTACACACACCACTCCCCTTCCCCTTTTTCTCCGCCACATTCATT CCCTTCACTTTCTCCTTTATCTACCTCTGCATTTCTCATTCTTCACTCAAATTCTCTCTCTCTCTGTTCTTATTCATGTACTACATTTCTATTAAAAAAA TCTGATTTTTACTCAATACATAACCCAGCATCAACATCTTGTAACTGTTTCTGTTGTTTCTGCACATACCCAGAAGCTTAAAATCCATCAAAATCCAATC TTGTTTGTGAATTCTTACTGAACCATGGATTCTAAGTCGGGTTTAACTCTTGGGTTAAGTTCACACATGACAACCCCATCAACCCCTTCTGTTCACACGG TTCTGTTCAAACACGAATCATCATCATCATCGTCAGCATCATCAACACAAACAGAAGAAAGCAACCTTGAACAATTCCAAGAGGACAATGAAACTATCAA TTTCATGGGTCAAAGTCTTTCTCTGAAGAGGAATAGAGAATCACAATATTCATGTTTCCCTTCAAAACGTGTCCATGTGAGTAACACCATAGAGGCAAAG AGAACTTGGGTTCAACGTTGGGGGAACAAATCAATTGAAAATGCAGACCCAGAAATCTTCCAAATCATGGAGAAAGAGAAAAGAAGACAATTCAAAGGGA TTGAATTGATTGCTTCTGAGAATTTTGTATGCAAAGCAGTGATGGAAGCATTAGGTAGCGCTTTAACAAATAAATACTCTGAGGGAATGCCAGGTGCAAA ATATTATACTGGTAATCACTACATTGATCAAATTGAATTTCTATGTTGTAATCGTGCATTAGAGGCTTTTGATCTTGATTCTCAGAAATGGGGTGTTAAT GTTCAACCTTATTCATGTACTTCTGCTAATTTTGCTGTGTACACTGCACTTTTGCATGCTGGGGGTAGAATTATGGGTTTGGATTCAGCATCTGGTGGAC ATTTGAGTCATGGGTATTATACTATGGGTGGGAAGAAGGTTTCGGCTGCGTCAATTTTCTTCGAGACTTTGCCTTACAAGGTTAATCCTCAAACTGGGTA CATTGATTATGAAAACCTTGAGGATAAAGCACTTGATTTTAGGCCCAAGTTACTTATTTGTGGTGGGAGTTCTTATCCTAGAGAATGGGATTATGCTAGG TTCAGACAGATTGCTGATAAATGTGGAGCAATTTTGATGTGTGATATGGCTCATATTGGCGGTCTCGTGGCTGCGAAGGTACTATGCATACTCTATATAA CTCATCCTTTCTCATGTTTGTTATAACTTATTTCTGTTCAAATCAAATTATGAATTTTGTAATTGTTCTTGCTGTTATGATTTGGTTTTTGTTGAGGGCA GAGACAGCTTTGAGTTAGAATTGTAAAATATAGATCCTTGCTTTTTTCCCTATGTATAGTGGAAGTGCAATTGCTTATGTAGATCAGGAAGCATACATTG TTTATGTTTGTGTTTCTTATATTAGTCTGTTCTTAGGTTTCCGGTATGCAGAACTGTTTATCGAAGAAATGTCATATGTATTTGAACTCTGTACAGTTTT GGGATTCTTTCATTTTTAATGCTTATGTGCTAAATGTGCTGTTCTTCTTATGTTTTGACTCTTTGTTAAGGATTTTACTTTCACATTCCACGTGTGAATG CGCTTCTACGTATATTGACAGTTTTTCTTTACAGGAAGTAGTTAGTCCCTTTGATTACTGTGATATTGTTACCTCAACAACCCACAAAAGTCTCCGAGGT CCAAGAGGAGGTATCATCTTTTACAGAAGAGGGCCAAAACCAAGGAAGCAAGGCTTTGTTCTTAGTCACGGAGACAATAATAATTACGATTTTGAGGATA GGATAAACTTTGCTGTATATCCATCATTACAAGGAGGTCCTCACAACAATCACATTGCTGCACTTGCCATAGCTTTGAAACAGGTTGCATCTCCAGATTA TAGAGCATACATGCAGCAGGTGAAGAAAAATGCGCAGGTGTTAGCATCTTCCCTGTTGAAAAGAAACTGCAGATTGGTAACTGATGGGACCGACAATCAT ATGTTGCTCTGGGATCTAACTGCAAGTGGCTTAATAGACAGAAACTATGAGAAAGTTTGTGAGGCGTGTCACATCACTCTCAACAAATGTGCCATTTATG GTTCTATTTCTACTGGTGGAGTAAGAATTGGCACTCCTGCAATGACAACAAGAGGCTGTGTGGAGGAAGATTTTGAGACCATAGCTGATTTTCTTCTGAG AGCAGCTCAGATTACCAGTATTGTACAGAGGGATCACGGGAAATCATCCAAAGACTTTCTCAAGGGTCTTCAGAATAACAAAGATATTTCTGAACTCAGA AACTGGGTCGAAACATTTGCCTCCCAGTTCGCAATGCCAGGATTCGATATTTGATTTGAAATTACAGAGTAGGCAGCATCCATACATCCTTGACATTATT ATGTCTCGGCTTACCTTCGATTTCTACCTTTTTGAAGTATTTTGGCATGGTAACCACAGGTCCCCCCCTTAGATATTTGTCAAGTTGGCTCATATAGATT ATGGATTCCAATAGGCTAAGATCACCATGCCCCCTTCATACATCATACTCAGCAACTCTTATTACTTTGACTTTGTAAAAATTATTCAAGGGTCATTTTG GTGCCTTTTCTCCAACCACAACTTTTGTGGCTGTCTTTGTTTATGAAAAAACTTATGTAATTACACTTCATTGTTTTAACAGGAAATACACACAAAAAGT GTTACTATTCACTGCTCATATTAACATGTTATAATTGAAATGTGCTGGCACTATTTTATAGTCATTACTGGATAAAAA BLAST |
| Tissue | flowers |
| Gene name | LI_gene_70819; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_148836
| Blastp | Serine hydroxymethyltransferase 6 from Arabidopsis with 62.54% of identity |
|---|---|
| Blastx | Serine hydroxymethyltransferase 6 from Arabidopsis with 69.57% of identity |
| Eggnog | Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism (By similarity)(COG0112) |
| Kegg | Link to kegg annotations (AT1G22020) |
| CantataDB | Link to cantataDB annotations (CNT0002904) |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019438565.1) |
| Pfam | Serine hydroxymethyltransferase (PF00464.18) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |