Ll_transcript_148844

• Id Trinity: FTRINITY_DN57694_c1_g2_i6
• Name Transcript: Ll_transcript_148844
• Sequence: AACACTTTGAGATGAACCTAGCCATGATTCAATCCCGGTTAAACCTAAACCTTGTATTCTTCACCATTTTCTTTCTCATTCTTCCTCTTTAGGAAAAACT CACTCTCCATTTCGCATATGCTTTTTTTGTACTTTCACGCTTCCCATTAACACTCTTACACACACCACTCCCCTTCCCCTTTTTCTCCGCCACATTCATT CCCTTCACTTTCTCCTTTATCTACCTCTGCATTTCTCATTCTTCACTCAAATTCTCTCTCTCTCTGTTCTTATTCATGTACTACATTTCTATTAAAAAAA TCTGATTTTTACTCAATACATAACCCAGCATCAACATCTTGTAACTGTTTCTGTTGTTTCTGCACATACCCAGAAGCTTAAAATCCATCAAAATCCAATC TTGTTTGTGAATTCTTACTGAACCATGGATTCTAAGTCGGGTTTAACTCTTGGGTTAAGTTCACACATGACAACCCCATCAACCCCTTCTGTTCACACGG TTCTGTTCAAACACGAATCATCATCATCATCGTCAGCATCATCAACACAAACAGAAGAAAGCAACCTTGAACAATTCCAAGAGGACAATGAAACTATCAA TTTCATGGGTCAAAGTCTTTCTCTGAAGAGGAATAGAGAATCACAATATTCATGTTTCCCTTCAAAACGTGTCCATGTGAGTAACACCATAGAGGCAAAG AGAACTTGGGTTCAACGTTGGGGGAACAAATCAATTGAAAATGCAGACCCAGAAATCTTCCAAATCATGGAGAAAGAGAAAAGAAGACAATTCAAAGGGA TTGAATTGATTGCTTCTGAGAATTTTGTATGCAAAGCAGTGATGGAAGCATTAGGTAGCGCTTTAACAAATAAATACTCTGAGGGAATGCCAGGTGCAAA ATATTATACTGGTAATCACTACATTGATCAAATTGAATTTCTATGTTGTAATCGTGCATTAGAGGCTTTTGATCTTGATTCTCAGAAATGGGGTGTTAAT GTTCAACCTTATTCATGTACTTCTGCTAATTTTGCTGTGTACACTGCACTTTTGCATGCTGGGGGTAGAATTATGGGTTTGGATTCAGCATCTGGTGGAC ATTTGAGTCATGGGTATTATACTATGGGTGGGAAGAAGGTTTCGGCTGCGTCAATTTTCTTCGAGACTTTGCCTTACAAGGTTAATCCTCAAACTGGGTA CATTGATTATGAAAACCTTGAGGATAAAGCACTTGATTTTAGGCCCAAGTTACTTATTTGTGGTGGGAGTTCTTATCCTAGAGAATGGGATTATGCTAGG TTCAGACAGATTGCTGATAAATGTGGAGCAATTTTGATGTGTGATATGGCTCATATTGGCGGTCTCGTGGCTGCGAAGGAAGTAGTTAGTCCCTTTGATT ACTGTGATATTGTTACCTCAACAACCCACAAAAGTCTCCGAGGTCCAAGAGGAGGTATCATCTTTTACAGAAGAGGGCCAAAACCAAGGAAGCAAGGCTT TGTTCTTAGTCACGGAGACAATAATAATTACGATTTTGAGGATAGGATAAACTTTGCTGTATATCCATCATTACAAGGAGGTCCTCACAACAATCACATT GCTGCACTTGCCATAGCTTTGAAACAGGTTGCATCTCCAGATTATAGAGCATACATGCAGCAGGTGAAGAAAAATGCGCAGGTGTTAGCATCTTCCCTGT TGAAAAGAAACTGCAGATTGGTAACTGATGGGACCGACAATCATATGTTGCTCTGGGATCTAACTGCAAGTGGCTTAATAGACAGAAACTATGAGAAAGT TTGTGAGGCGTGTCACATCACTCTCAACAAATGTGCCATTTATGGTTCTATTTCTACTGGTGGAGTAAGAATTGGTGAGTAGCTCTCGTTTAGTATGTCT GAAAACATGGTTTTGAATAGTTTCTATTTACATGATTTTTCCAGCAAATATCTCATTCACATGTCTGCCAGACCATTTAATTTAGGATTTAATATTCCAT GCTTAGCTTATGATTCGTTATGGAGTCTTTGATCCAATCTCTGAATGTTAACCAATTCCTAGAAGCTCGAACTTCCACAGATTTAGTAAATGGTCCATCC ATTCTCTCATTTTCTAAAGAATCGATGTAAAGAAAGAAATTATGTATTTATTGTGCCTATCCATTCCGGTACAGGCGATAATGGATTATCCACTCTCAGT ACATGAGAGCGTAGCTTATCCTCTCCCGGCCCATCCATTACCTGCATAATTTCCATGTTTAAGCAAATTACTATTATGTCTTCTGAATGCCTTTATGCTT TATTCTTGTTCTCAAGTTTCTTTATTTCATCGGTTTTCAGGCACTCCTGCAATGACAACAAGAGGCTGTGTGGAGGAAGATTTTGAGACCATAGCTGATT TTCTTCTGAGAGCAGCTCAGATTACCAGTATTGTACAGAGGGATCACGGGAAATCATCCAAAGACTTTCTCAAGGGTCTTCAGAATAACAAAGATATTTC TGAACTCAGAAACTGGGTCGAAACATTTGCCTCCCAGTTCGCAATGCCAGGATTCGATATTTGATTTGAAATTACAGAGTAGGCAGCATCCATACATCCT TGACATTATTATGTCTCGGCTTACCTTCGATTTCTACCTTTTTGAAGTATTTTGGCATGGTAACCACAGGTCCCCCCCTTAGATATTTGTCAAGTTGGCT CATATAGATTATGGATTCCAATAGGCTAAGATCACCATGCCCCCTTCATACATCATACTCAGCAACTCTTATTACTTTGACTTTGTAAAAATTATTCAAG GGTCATTTTGGTGCCTTTTCTCCAACCACAACTTTTGTGGCTGTCTTTGTTTATGAAAAAACTTATGTAATTACACTTCATTGTTTTAACAGGAAATACA CACAAAAAGTGTTACTATTCACTGCTCATATTAACATGTTATAATTGAAATGTGCTGGCACTATTTTATAGTCATTACTGGATAAAAA
• Tissue: flowers
• Gene name: LI_gene_70819;
• Additional information: details;

Expression of Ll_transcript_148844

FPKM

• FPAB: 0
• FPNAB: 0
• LF1: 0.4
• LF2: 0.1
• LF3: 0.2
• LF4: 0.1
• UF1: 0.3
• UF2: 0.1
• UF3: 0.1
• UF4: 0.3

Labels

• FPAB: abscising flower pedicels
• FPNAB   : non-abscising flower pedicels
• LF1: lower flowers stage 1
• LF2: lower flowers stage 2
• LF3: lower flowers stage 3
• LF4: lower flowers stage 4
• UF1: upper flowers stage 1
• UF2: upper flowers stage 2
• UF3: upper flowers stage 3
• UF4: upper flowers stage 4

Annotations of Ll_transcript_148844

• Blastp: Serine hydroxymethyltransferase 6 from Arabidopsis with 65.52% of identity
• Blastx: Serine hydroxymethyltransferase 6 from Arabidopsis with 70.75% of identity
• Eggnog: Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism (By similarity)(COG0112)
• Kegg: Link to kegg annotations (AT1G22020)
• CantataDB: Link to cantataDB annotations (CNT0002904)
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019438565.1)
• Pfam: Serine hydroxymethyltransferase (PF00464.18)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;