Ll_transcript_215066

• Id Trinity: FTRINITY_DN57711_c2_g1_i1
• Name Transcript: Ll_transcript_215066
• Sequence: AAGATGAAGAGTAAGTCTAAAAGAGTTACGACTCTTCCCCGAATATTTAGAGATTACTTATAAAGTTAAGACACTTGCATTCCATCTCCAGTTCATTTCT CTCTCTCTCACTATCACATACATGGCCAAATCAATTTCTCTAACTAATCACCTTTCCAGACTCATATCTTATTCTTCTTCTTCTTCTTCAACAATAACAA CACTCACATTCCTCTCTCGATCTCAATTCCATTTTCCTTTTAGAAGTTTCTCTTTCAGACCTCTCTCCACCAATACCACTCCATACCCTCTCCAATACGA CTTAATTATCAATCGCCCTCCTCCCCAAACACCTCGCCCACCACCTGTTCGATCAAATTCCTCTCATGACAATGCCGTCTCTGAACCCGATGAACCCGAC CTTAGACTAGACACCTGGGTGGACCGGAAACTCGCCCAACCGGGTTCCCAACTTGAAAAGGGAAAGAGAAAGTATTACAACAAAAGGAGGAAGAGGATGT ACGGTGGTTCTGACTCTGATGAAGATGGTAACAGGAGAATGGAGGATGAGATGATTGAGCTGAAACCTGAAGTTATAGAGTTTCCTACACTGCATAAGAG AGAAGAGGAACTGCATTTCTACGACGCATTTAGTTATCCGTGGGAGAAGGATAAGCATTACAAGATGGTGTATCAGTTGGAGAAGAAGTATTTTCCGGAC CAGTGTCTCGATAAGGCATTTTTACAGCCAGGGGCGAAGCAAGAGCGATCAAATGTAAATGACAACGAAATCAAGGCCAAGAAGAAAGAGGAGGATAAGA AGTTGGTGTTTTTTGAGGGAGAGAAAGAAAAGAGTGATAAAGATGTTAGCGAGAAGAAAGTGGAGGATTTTTTTAAGGGCTTGAAGAAGAAGAAGATTAA TAGTGATCCAGTTGTTGGTGATGGGAATGTGAATGGAGTAGGAGAGCCATTTTTTTCATCAAGGAGAACTGGTCTTCCTCCTGTTTGGGATAGTCCACAT GGCACTGTGCTGTTGATTAACAAACCCAAAGGTTGGACTTCATTCACAGTTTGTGGAAAGCTGCGTCGCCTAGTCAAAGTGAAAAAGGTAGGCCATGCTG GAACTCTTGACCCAATGGCTACTGGTTTACTGATTGTTTGTGTTGGCAAAGCAACAAAACTGGTAGACAGATATCAAGGGATGATTAAGGGTTATAGCGG GGTTTTCCGCTTAGGGGAGGCTACTTCAACATGGGATGCCGATTCACCAGTCATTCAACGTGAGCCATGGGAGCACATCAAAGATGAGGACATAAAGAAA AATGCTTCATCCTTTTGTGGGGAGATTTGGCAAGTTCCTCCAATGTTCTCTGCTATTAAAGTTGGAGGTGAAAAGATGTATGAGAAAGCAAGGAGAGGAG AAAGCATTGAACTCTCACCAAGACGGATTTCAATTTTCCAGTTTGACATAGAGCGTAGCTTGGATGACAGACAAAATTTGATTTTTCGGGTGACATGTTC TAAAGGGACATATATTCGGTCACTTTGTGCAGATTTTGGGAAGGCTCTTGGAAGCTGCTCCCATCTTACTGCTCTTAGAAGAGATTCAATTGGGCAATAT TTAGCTGATGATGCATGGGAATTTCAAGAGCTGGAAGAAGCTATTACCAAAAGTTATGTCTAACTGCTTTGTTAGCCCATCCCATGTTATGGAACCAAGG TTTTGAATTACCATTGCAGTTATGTTGTGTTTACAAAATTATCATGGGAAAACATAACCACTGTGGTCATAATAATGGTTATGGTTTTAATGCAGTTGTA GAGGCTACCGAACTACAACCTTGCACCCTAATTATGATCACATACCTTGAGTTGAATGTTTCTTTAATATGTGCACACTGATTTATAAATTATAAACCGA TTTTCAAACATGTATTTCTTTGTAGAGTTTATTTATTCTTTTTTAATTTGCTGGTTTTGATGTTCTTTCTTTTTCCTTTTTTTTTCTGGTTGATAAGTGC ATCTTGCATTATTTTGTAGTTAAATAATGCGAATTCTGATAGTTGCTAAAGGATGTTGAAAATTAGTTGATTTCTGTAGTATATTCTTATTATTAGTCAT GTTAATTTGCTTCAAGGGAATAGCATGTTGGAGAAGACTCAATTGATTTATAAGAATATTACAAGTTTATTATGAC
• Tissue: flowers
• Gene name: LI_gene_70978;
• Additional information: details;

Expression of Ll_transcript_215066

FPKM

• FPAB: 5.8
• FPNAB: 11.2
• LF1: 13.9
• LF2: 11
• LF3: 9.6
• LF4: 9.2
• UF1: 11.7
• UF2: 12.7
• UF3: 9.2
• UF4: 8.6

Labels

• FPAB: abscising flower pedicels
• FPNAB   : non-abscising flower pedicels
• LF1: lower flowers stage 1
• LF2: lower flowers stage 2
• LF3: lower flowers stage 3
• LF4: lower flowers stage 4
• UF1: upper flowers stage 1
• UF2: upper flowers stage 2
• UF3: upper flowers stage 3
• UF4: upper flowers stage 4

Annotations of Ll_transcript_215066

• Blastp: tRNA pseudouridine synthase B from Flavobacterium with 48.2% of identity
• Blastx: tRNA pseudouridine synthase B from Flavobacterium with 47.75% of identity
• Eggnog: Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs (By similarity)(COG0130)
• Kegg: Link to kegg annotations (Fjoh_0570)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019428203.1)
• Pfam: TruB family pseudouridylate synthase (N terminal domain) (PF01509.17)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;