| Id Trinity | FTRINITY_DN57711_c2_g1_i3 |
|---|---|
| Name Transcript | Ll_transcript_215069 |
| Sequence | AAGATGAAGAGTAAGTCTAAAAGAGTTACGACTCTTCCCCGAATATTTAGAGATTACTTATAAAGTTAAGACACTTGCATTCCATCTCCAGTTCATTTCT CTCTCTCTCACTATCACATACATGGCCAAATCAATTTCTCTAACTAATCACCTTTCCAGACTCATATCTTATTCTTCTTCTTCTTCTTCAACAATAACAA CACTCACATTCCTCTCTCGATCTCAATTCCATTTTCCTTTTAGAAGTTTCTCTTTCAGACCTCTCTCCACCAATACCACTCCATACCCTCTCCAATACGA CTTAATTATCAATCGCCCTCCTCCCCAAACACCTCGCCCACCACCTGTTCGATCAAATTCCTCTCATGACAATGCCGTCTCTGAACCCGATGAACCCGAC CTTAGACTAGACACCTGGGTGGACCGGAAACTCGCCCAACCGGGTTCCCAACTTGAAAAGGGAAAGAGAAAGTATTACAACAAAAGGAGGAAGAGGATGT ACGGTGGTTCTGACTCTGATGAAGATGGTAACAGGAGAATGGAGGATGAGATGATTGAGCTGAAACCTGAAGTTATAGAGTTTCCTACACTGCATAAGAG AGAAGAGGAACTGCATTTCTACGACGCATTTAGTTATCCGTGGGAGAAGGATAAGCATTACAAGATGGTGTATCAGTTGGAGAAGAAGTATTTTCCGGAC CAGTGTCTCGATAAGGCATTTTTACAGCCAGGGGCGAAGCAAGAGCGATCAAATGTAAATGACAACGAAATCAAGGCCAAGAAGAAAGAGGAGGATAAGA AGTTGGTGTTTTTTGAGGGAGAGAAAGAAAAGAGTGATAAAGATGTTAGCGAGAAGAAAGTGGAGGATTTTTTTAAGGGCTTGAAGAAGAAGAAGATTAA TAGTGATCCAGTTGTTGGTGATGGGAATGTGAATGGAGTAGGAGAGCCATTTTTTTCATCAAGGAGAACTGGTCTTCCTCCTGTTTGGGATAGTCCACAT GGCACTGTGCTGTTGATTAACAAACCCAAAGGTTGGACTTCATTCACAGTTTGTGGAAAGCTGCGTCGCCTAGTCAAAGTGAAAAAGGTAGGCCATGCTG GAACTCTTGACCCAATGGCTACTGGTTTACTGATTGTTTGTGTTGGCAAAGCAACAAAACTGGTAGACAGATATCAAGGGATGATTAAGGGTTATAGCGG GGTTTTCCGCTTAGGGGAGGCTACTTCAACATGGGATGCCGATTCACCAGTCATTCAACGTGAGCCATGGGAGCACATCAAAGATGAGGACATAAAGAAA AATGCTTCATCCTTTTGTGGGGAGATTTGGCAAGTTCCTCCAATGTTCTCTGCTATTAAAGTTGGAGGTGAAAAGATGTATGAGAAAGCAAGGAGAGGAG AAAGCATTGAACTCTCACCAAGACGGATTTCAATTTTCCAGTTTGACATAGAGCGTAGCTTGGATGACAGACAAAATTTGATTTTTCGGGTGACATGTTC TAAAGGGACATATATTCGGTCACTTTGTGCAGATTTTGGGAAGGCTCTTGGAAGGTATTAGCTTATTGCTCCATAATTTAAAAAAAAATTGCTTTGCTGA TTTTTTTCTCCCTATTTTATTCCATTTAAATTAATAATTGATAGATGTAAAAGAGGTTATGACTTATGAGAAAACTAAAGTGACAAAATGGGAAAACATT GTCATTCTCACATTATAATAATTTCCCCGTCATTACTTTAATTATTATTAGTTAATGGTTTGACACTTTCCTTCTAATGTTGAGTTTAGTGCAAGCTGCA CCCATCGAAGTGGGGAATGTACTCGCTTTTTAATTTGTATAAGGTTTGCAAGATAGCAGGACATGTGAAAATGAAATATTCTCAAACTCCAAAATTGAGT TACTAAAGTTCATTTTTCACTGTAATTTTTCAGCTGCTCCCATCTTACTGCTCTTAGAAGAGATTCAATTGGGCAATATTTAGCTGATGATGCATGGGAA TTTCAAGAGCTGGAAGAAGCTATTACCAAAAGTTATGTCTAACTGCTTTGTTAGCCCATCCCATGTTATGGAACCAAGGTTTTGAATTACCATTGCAGTT ATGTTGTGTTTACAAAATTATCATGGGAAAACATAACCACTGTGGTCATAATAATGGTTATGGTTTTAATGCAGTTGTAGAGGCTACCGAACTACAACCT TGCACCCTAATTATGATCACATACCTTGAGTTGAATGTTTCTTTAATATGTGCACACTGATTTATAAATTATAAACCGATTTTCAAACATGTATTTCTTT GTAGAGTTTATTTATTCTTTTTTAATTTGCTGGTTTTGATGTTCTTTCTTTTTCCTTTTTTTTTCTGGTTGATAAGTGCATCTTGCATTATTTTGTAGTT AAATAATGCGAATTCTGATAGTTGCTAAAGGATGTTGAAAATTAGTTGATTTCTGTAGTATATTCTTATTATTAGTCATGTTAATTTGCTTCAAGGGAAT AGCATGTTGGAGAAGACTCAATTGATTTATAAGAATATTACAAGTTTATTATGAC BLAST |
| Tissue | flowers |
| Gene name | LI_gene_70978; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_215069
| Blastp | tRNA pseudouridine synthase B from Flavobacterium with 48.95% of identity |
|---|---|
| Blastx | tRNA pseudouridine synthase B from Flavobacterium with 48.42% of identity |
| Eggnog | Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs (By similarity)(COG0130) |
| Kegg | Link to kegg annotations (Fjoh_0570) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019428203.1) |
| Pfam | TruB family pseudouridylate synthase (N terminal domain) (PF01509.17) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |