Id Trinity | FTRINITY_DN57805_c3_g1_i4 |
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Name Transcript | Ll_transcript_58298 |
Sequence | CTCTTTCTCAAAACCCATTTTTTTTTTTTTTTTTTTTTGTAAAATGAGGAGTTAGGTGTCTCGACAAAGAGTGTTTTCGCTAGGCCGAAGCTTATTCAAC AGATCAAGACATCAACCTCCACACCACTAACTTAAAAGCCCAAATCCCACATAGTTACAAACCCCAAATTATGTCACAGCTCCATCAAAATGACCACAGT AAATAGCATCACATCTTTGTCCCACTCTTTTTCGTTTATTGTAATGATCCTAGTACCATGGCTAATTTCTTTATAATGAGTGAAAATATTGTTAATCGAT GATATCTATGGACTTTTAGTATTGTTTGCTAGTTTGATTTTGGAGGGGAAAGAAGGACTTTTAAGATTGTTCACAAATGTTTTTCATAGCTTATAAGCTT TCATTTTTTTTTTCAAAATCTAAGTTGTAAACAAACCTTTAAGGTACATATAGAAGAATCACGAAACCCTTATCTTAAGATTCTAATTCTTTTAGCAATT TTGGAGTATTTTATTAGCTTGTCCATGTAACATGGTGAGTCGAAGCCTATCTCTTCCTCTCTCGAATTGCCGAAGCCATCAAAATCCCACTCCCAATCTC AACTTCTCACAACTCCAAAATGCAATCTCCAACCTTGACCTCACTTCTAACAACCAACAACACACTCGTCACAAACTCATCACTTCCTCCATTCTCCTCA AATCTTGCATCCGCTCCCACAACTTCCAACTCGCCAAACTCCTCCACCTCAAACTCACTGAGTCACGCCTCCCCCTTGACTCGCTCCTCCTCAACTCCCT CATCACCCTCTACTCCAAATGCGGCGAGTGGCCCCACGCGCTCTCCATTTTCCAAACCATGGATAACGCTAAAAAAGACTTAGTCTCCTGGAGTGCCATT ATCGCTTGTTTCGCCAACAATAACATGGACTTCAAAGCTCTTCTCACTTTTCTCGATATGCTACAAAATGGGTTTTACCCGAATGAGTATTGCTTCACTG CTGCGATTCGCGCGTGTTCTAACGCGCAGTTTTGTTTTACTACTGGTCGTGCTGTGTTTGGGTTTTTGTTGAAGACTGGGTACTTTGATTCTCATGTTTG CGTTGGTTGTGCGTTGATTGATATGTTTGTGAAGGGTGGTGGTGATTTGGATTCTGCTTACATGGTGTTTGAGAAAATGCGTGAGAGAAATGTTGTTACT TGGACCTTGATGATCACGAGGTTCATGCAATTGGGTTTCGCTGGTGATGCGGTTGATTTGTTTTTGAGGATGTTGGTGATGACTGAGTATGTGCCCGATA GGTTTACATTGACTAGTGTGTTATCGGCATGTGCTGAGATGGAGTTGTTATCGCTTGGGAAGCAGTTGCATTCTTGGGTTATCAGGTCAGGATTGAGTTC GGATGTGTTTGTGGAGTGTAGTTTGGTAGACATGTATGCGAAATGTGGATCAGTAGAGAATTCTAGGAAAGTGTTCGATAGAATGCCGGATCGTAATGTT ATGTCTTGGACTGCACTTATCACAGGGTATGCACAAGGGAGTGGACATGAACAGGAAGCTATTAAATTGTTTTGTGAGATGATGCTTCAGGGTCATGTTG TGCCAAATTGTCTCACATTCTCAGGTGTCCTCAAGGCTTGTGTGAATGTTCCTGATTTTGGCTTCGGTGAACAGCTTCATAGCCAAACAATTAAGCTAGG GTTTCATGGAGTTAACCATGTAGGGAACTCTCTTGTTAACATGTATGCTAGGTCTGGAAGAATGGATTGTGCTCGCAAAATTTTTGATATCCTCTTTAAG AAGAATTTGATATTGATCGATACAGTTGCTGAGGAAAATACGGAAATTTTGAATTCTGAAGAAGCCTTTGGTCATGAAATTGAGCACAATGGCACTGGAG CGAATGCTTTTACATATGCATGCCTATTAAGTGGTGCTGCTTGTATTGGTACAATTGGTAAGGGTGAACAAGTTCATGCTCGAGTAGTGAAGTCCGGATT TGGGACAAACCTGCTTGTTAATAATGCTTTAATCTCTATGTATTCCAAGTGTGGAAACAAAGAAGCTGCTTTACAAGTTTTTAATGACATGGGGGTACGA AATGTCATATCTTGGACCTCTATTATAAATGGTTTTGCCAAACATGGATTTGCTACAAAAGCATTAGAATTGTTCAATGAAATGCTTGAAATAGGTATAA AGCCTAATGATGTCACTTACATTGCAGTTTTATCAGCCTGTAGTCATGTTGGTTTGATCGATGAGGCGTGGAAACACTTCAATTCCATGCGTTTTAACCA CGGTATTGTTCCAAGGATGGAACATTATGCATGTATGGTTGATTTGCTTGGTCGTTCTGGATTGCTTTCAGAAGCCATTGAATTTATTAACTCAATGCCT TTTGACGCTGATGCGTTAGTGTGGCGTACATTTCTTGGTTCTTGTCGAGTTCATCGTAACACAGAGCTTGGAGAGTATGCTGCAAAAATGATTCTTGAGC GGGAACCTCATGATCCAGCTGCTCATATATTATTGTCAAACTTGTATGCATCAGAAGGGCGGTGGGATGATGTAGCAGCCATTAGAAAAAACATGAAACA GAGAAAATTAGTAAAAGAAGCAGGTTATAGCTGGATTGAAGTTGATAACAAGGTGCACAAATTCCATGTCGGGGATACTTTACACCCCCAAGCTCAAAAG ATATACAATGAACTTGATGAATTGGCTTCGAAAATAAAGAAATCGGGTTATGTCCCAAATACAGATTTCGTCCTTCATGATGTGGAAGATGAACAGAAGG AACAGTATCTGTTTCAACACAGTGAGAAAATTGCAGTGGCATTTGCTCTTATTAGTACCCCCAATCCAAAACCTATAAGAATATTTAAGAATCTTCGTGT TTGTGGGGACTGCCACTCGGCAATTAAGTATATCTCCGTGGTCACGGGAAGAGAGATCGTGGTGAGGGATGCAAATCGGTTTCATCATATTAAGGATGGG AAATGCTCTTGCAATGATTATTGGTGATCCCTAAATGTCTAACTGAGTTTAGATTTGTTGGCCACAGTATTTCCTGATACAGGAACTCATTCACTTTCAT ACTGCACAGAATATATAAAGGTTGTGGATATGGAAAATCCTTGAATATCATTTTTTAGATGTTGAGACTTGATGCTACTCTTTACTATTCTTCCCTGTTG TTTTTAATGGAGATTATTCAAGATATTGTTGCTAAAATCAGCTATCTGAATGGTACTATATAAGAAAGAGCCAATTTGGTATTATAACATACAAAAAAGA AAGAAAAAAAGTAGTCAACATGATTTGATTTTGAAATAATTATTTTTCCGAATAAGTGTCACTCATCATGAATTGAATTTTTTACCTTTTGATCTTTCTT ACCCGTCTTATCGGTCAATTGAGATTCCCTATGGCTCACCATTTTATTTTTTTCTTTTTCTATGCCTAACATTGGACCATGAGGTGTGAGGTTGATATAC TATTTCCTTGTAATTTCTTTGACATTTTCTGGACAGAAGCTAGTAGGAATATTCCCTAAGAAAAAGGGGAAAGATAATTAACTCCTTCCAAATTTGACAA GTCTAAAATTTCCATTTCACACAGACTGAACACATAGATAGACACAAATACACAATCTCTCTCCATCATCACTAAAGTAAAAATAAAAAAAATAAAGACA AAATTTACATACAGATCTGATCCAGAGAGACAATAATGTAAGAGAAAAAACAACTCAGATTTGTAGTGTACCTTGTGAGAGGAGAGAAGAGAAGAGAAGA GAAACTTAACCGACAAATTTCAATTTCGTACGAAACCTTCCTCCCTCACTCTCTTTCTCATTCATTCTCTCAATTTTTCTTACTATAAATCTATAACCTC ATTCAATTTTACATAACCTTCTACCTTCTTCGAAGAAGAAGAAATTGTGGTTGTTTTGAAAATGGAGAATGAAAAGAAAGCGTCAGCGATATCTGATGTT GGAGCATGGGGAATGAACATTGTGAGTTCCGTTGGAATTATTATGGCTAACAAACAACTCATGTCGAATGGTGGTTACGCTTTCAGTTTCGCTACTACGT TAACTGGATTTCATTTTGCGGTAACTGCTCTGGTGGGTCTGGTTTCGAATGCTACGGGCTATTCTGCGTCGAAGCATGTCCCGATGTGGGAGCTTCTTTG GTTCTCAATTGTTGCTAATACTTCCATCACTGGCATGAACTTGAGCCTCATGCTTAACTCTGTTGGATTCTACCAGATATCAAAACTAAGCATGATTCCG GTGGTT BLAST |
Tissue | flowers |
Gene name | LI_gene_71802; |
Additional information | details; |
FPAB | abscising flower pedicels |
FPNAB | non-abscising flower pedicels |
LF1 | lower flowers stage 1 |
LF2 | lower flowers stage 2 |
LF3 | lower flowers stage 3 |
LF4 | lower flowers stage 4 |
UF1 | upper flowers stage 1 |
UF2 | upper flowers stage 2 |
UF3 | upper flowers stage 3 |
UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_58298
Blastp | Pentatricopeptide repeat-containing protein At3g49170, chloroplastic from Arabidopsis with 58.05% of identity |
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Blastx | Pentatricopeptide repeat-containing protein At3g49170, chloroplastic from Arabidopsis with 58.05% of identity |
Eggnog | Pentatricopeptide repeat-containing protein(ENOG410Z7Z7) |
Kegg | Link to kegg annotations (AT3G49170) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019453383.1) |
Pfam | PPR repeat (PF01535.19) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |